Genetic Map of Chlamydomonas reinhardtii
We are currently working on SNP discovery for Chlamydomonas reinhardtii. Of the first 72 "major" scaffolds, we have selected 31 for targeted resequencing.
By aligning our resequencing reads to the canonical sequence, we will obtain a group of base substitutions using Crossmatch. From that group we will use factors
such as read quality and primer design to select SNPs to genotype for genetic mapping.
| Chlamydomonas Data |
| Major Scaffolds |
Our pre-resequencing analysis of major scaffolds.
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| Selected Scaffolds |
The 31 scaffolds that had ideal resequencing targets at each end.
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| Other Resources |
| JGI Chlamy v2.0 |
The Joint Genome Institute page for Chlamydomonas reinhardtii.
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