chrom chr_pos cb25_ultra_contig gm_chrom est_cm_min est_cm_max indel alleles reads_obs pcr_primer_left pcr_primer_right af16_product vt847_product chrI 743929 cb25.fpc4101 Cb1 2.69 2.69 I-9 ---------/TTTCTATTA 1 CTTTTGTTCTGTTTGCCTATAAA ACGACCGATGGTCTACATAA 296 305 chrI 765598 cb25.fpc4101 Cb1 2.69 2.69 I-18 ------------------/ATAGGTTTCTGAAATCAA 1 GCCCTTTAACAAGAGTTAAAAAC TTGGAAATTAGAAGGATGTTTAG 298 316 chrI 1074614 cb25.fpc0091b Cb1 3.91 5.71 I-24 ------------------------/GAGAGAGAGAGAGAGAGAGAGAGA 1 CTATTGGGTACTACTGGGATTG CCCTCTCATAGTTCATAAATCAC 297 321 chrI 1327960 cb25.fpc4321 Cb1 13.45 13.45 D-8 CTTTAAAT/-------- 2 TAAAGCTGTGGATGTCAGAAA TAGCTCAGCCAAACTATGAAATA 387 379 chrI 2211707 cb25.fpc4321 Cb1 13.45 13.45 I-26 --------------------------/AAGAGAGAGAGAGAGAGAGAGAGAGA 1 CATTTTTGATTACGGTATTTCTG GATTAGAATGTCGAGAAAAATCA 296 322 chrI 2557912 cb25.fpc4321 Cb1 13.45 13.45 D-7 GGGGGGG/------- 1 TACCAAAAACAGTCGATTGAA TGACCCAGAATACTAATTTTTGA 297 290 chrI 2979755 cb25.fpc3857b Cb1 14.03 14.03 D-7 AATAAAA/------- 1 TGGATTCGTATTCAACTATAGGA CAGCTAATAATTTTTGAACTGGT 356 349 chrI 3980200 cb25.fpc0071c Cb1 14.03 14.03 D-14 TAGTTTTTTTTTGA/-------------- 1 TTCATAATTCAATTCCTTTGATT TCTCTCTTCTTTCTCTTCGTGTA 300 286 chrI 3989468 cb25.fpc0071c Cb1 14.03 14.03 I-24 ------------------------/ATATATATCTCTCTCTCTCTCTCT 1 GGGAGTCTTCGAATAGTTTTG TTTTTAAACAAAAGCTTCACTGT 300 324 chrI 4029124 cb25.fpc0071c Cb1 14.03 14.03 D-9 ATGCGTTTA/--------- 1 ATCTGACAAGTGCATACAAAAAT AGTCTGTAAAACTGACGAAGAGA 300 291 chrI 9132065 cb25.fpc2032 Cb1 21.23 21.23 I-14 --------------/CGTCTTCGATACGT 1 CACACTTTTCTCTGGAGAGGT GAGAAAAATTCAGTAATGGAAGA 296 310 chrI 10146626 cb25.fpc4030b Cb1 31.56 31.56 I-7 -------/GACTTTA 1 AAGAAGCAGTGACCTTTCAA TTTATTGGGGTCATCAAGATT 300 307 chrI 10437308 cb25.fpc2090 Cb1 43.93 43.93 D-9 AGGATGAAG/--------- 1 GAGAAACAGACGATGTAGAAATG TTTCCAAAGAGCTCATCATAGTA 300 291 chrI 10540223 cb25.fpc2090 Cb1 43.93 43.93 I-24 ------------------------/AAACTATGGCTGAGCTCGCGAATG 1 ATTGAAATTTAGGATACTGGTAAAC TCCCTAAGTTTAATACTGGTAAGC 390 414 chrI 11222368 cb25.fpc4140 Cb1 43.93 43.93 I-14 --------------/TCAATAATGCGGAC 2 ATATATTCAAGGAGAAGGGAAAT AAGGTTTCTCATTAGAGCGTATT 301 315 chrI_random 685902 cb25.fpc1402b Un D-7 TTTTGTG/------- 1 TCTGCGTTTCCTCATTTTTA ATCTGAATTTTGCAGGAGATT 323 316 chrI_random 689664 cb25.fpc1402b Un I-28 ----------------------------/TTTTCGAAAAATTCGTCCCCAAACTTTT 1 TTGAAAATAGAAGAAATTTGATAGG AACGGTTTCTTAAAAAGAGAAAA 294 322 chrI_random 915143 cb25.fpc0078 Un I-21 ---------------------/CGAGCCTTTTTAGTGATTTTT 1 AGCTAATATTCGCCTTAAAACTT ACAGTAATCGGTGTATAAAAATCA 300 321 chrI_random 997853 cb25.fpc0078 Un D-9 GACCCATTT/--------- 1 CAACGCAACAATTACTAGAGAGT ATTCATTTGAATTTTTGCAGAC 300 291 chrI_random 2088995 cb25.fpc4122 Un D-16 AGTGGAAACTGGTGGG/---------------- 1 TGAAATTACCGTTTTTGTTAGAA TTGAATCTGGAGAAAATAAGCTA 305 289 chrI_random 2405726 cb25.fpc4122 Un D-7 NGTTGGG/------- 1 ATTATTTTAAGCCAGTTTTAGCA CAAACAGCTCAAAGTTAAAATTC 298 291 chrII 205385 cb25.fpc0022b Cb2 0 0 I-8 --------/CCACAGCA 1 AGTGGCATATTGTGAGAAGATT CACGACTCTCTAAACTCTGAATG 310 318 chrII 647091 cb25.fpc0022b Cb2 0 0 D-7 TACTAGT/------- 1 TCACGTGAACTTTTCTCTCC ATCGAAATATCTCGGCTTAAA 298 291 chrII 865528 cb25.fpc0022b Cb2 0 0 I-20 --------------------/TAGCAAAGTTAGCTAACCGC 1 GTAACCTAACAAAGTTGCATTCT CCTGCAAAGTTTTAAGTTGAGT 300 320 chrII 1489578 cb25.fpc4168 Cb2 2.381 2.381 D-14 CATTTTCAGGGGTT/-------------- 1 GAAAAATCCGTTAAAAATGTTCT AATTGACCGATTTTGACCTTA 279 265 chrII 1489583 cb25.fpc4168 Cb2 2.381 2.381 D-11 TCAAAAATTGG/----------- 1 GAAAAATCCGTTAAAAATGTTCT AATTGACCGATTTTGACCTTA 279 268 chrII 1793817 cb25.fpc4292 Cb2 6.96 7.573 D-18 GAGAGATGTTCTTACAAC/------------------ 1 TTTTTACCATTCATTTGTTACTTTT AAAATTCAGCTGTTCTAAAATTG 300 282 chrII 2146317 cb25.fpc0071a Cb2 8.187 8.187 I-10 ----------/ACGATTTCCA 1 GGATAAAATCATGGAAAATCAAT AATCCCTCTCTGAAGTCAACTAT 301 311 chrII 2276602 cb25.fpc0071a Cb2 8.187 8.187 D-10 AAATGGAGAA/---------- 1 AAGATGCTCAGAGAAACTGATAA CTTACATTCATAACCTCGATTTC 299 289 chrII 3251195 cb25.fpc0011 Cb2 11.878 13.098 I-8 --------/TTCTAAAA 1 GTAAACTTTGAGCAAATGAAAAA ACGGAATTTCGAGAACATTAT 303 311 chrII 4678910 cb25.fpc0072 Cb2 18.165 18.165 D-8 CTTCTTTC/-------- 2 TTTTTACGACATGACAGAATAGG AGTAGACCTCATACATTGCAGTT 300 292 chrII 5200246 cb25.fpc2454a Cb2 18.764 20.014 I-10 ----------/GATTTGCAGA 1 GAAGGTAGGTGAGAAAGTTATCC CACCCTGTAGAGCAATGATAGTA 301 311 chrII 6524563 cb25.fpc0058 Cb2 21.28 26.584 I-12 ------------/CATCGCGATGAT 1 CCCTATACCTGAATACAGAATCA AAATAGACTTGTTTCCTTAACATTG 300 312 chrII 6667943 cb25.fpc0058 Cb2 21.28 26.584 D-12 TCATAACATATC/------------ 1 AGAAGAGGAAAACGAATTGAG CGACTACTGTAGGATCTGTGAAT 300 288 chrII 6742522 cb25.fpc0058 Cb2 21.28 26.584 I-15 ---------------/ATTCGGTGCAGCAGC 1 ATAATTATAATCACCCTGCTTCA AAGACTACGACGCTGTAGGA 281 296 chrII 7397026 cb25.fpc0058 Cb2 21.28 26.584 D-10 GGGGAAAAAA/---------- 1 AACTCACAGCTTACACACAGC CGTTGACTGACAATCATACTTT 398 388 chrII 7590280 cb25.fpc0058 Cb2 21.28 26.584 I-12 ------------/AGAAGAAGAAGA 1 GTTCTCCAATTCTGTTTCAATC GGCTGTATGAAGTTGAAAATATC 301 313 chrII 10102616 cb25.fpc4206 Cb2 27.918 33.95 I-18 ------------------/GTTATGTTCTCATATCTT 1 TTATTCCCATTGGATTATTGTTA TAGTAAGATTTTGGTCGACTTGT 296 314 chrII 11872841 cb25.fpc1402a Cb2 37.938 37.938 I-12 ------------/GAATCTCAGTTA 1 GTGAGGAAATTTTAAAGCTCATT TTTCGAAACTAGTTGGAACTTTA 296 308 chrII 11873946 cb25.fpc1402a Cb2 37.938 37.938 I-10 ----------/AAAAAAAAAT 1 CTTGATTTCTGGAAAATGAATC ACTTTTCTTCTATCAACCCTCTC 298 308 chrII 11955677 cb25.fpc1402a Cb2 37.938 37.938 D-8 ACTAGTTC/-------- 1 AAGTCAAATATTTCATCCAAGTCT AATTGCATATGATTCACATCTTT 295 287 chrII 12079022 cb25.fpc1402a Cb2 37.938 37.938 I-9 ---------/CTAAAATCA 1 AAATTAACGGTATTTGCTCATT TTGGTATTTTGTGAGACTTTCAT 298 307 chrII 12208880 cb25.fpc1402a Cb2 37.938 37.938 D-9 AAGGGGTCA/--------- 1 AAGGGTTATAAATAGGTTTTTGAA ATTTTTGCCTGTAAAATCGTTAT 300 291 chrII 12208894 cb25.fpc1402a Cb2 37.938 37.938 D-8 CATGAGGT/-------- 1 AAGGGTTATAAATAGGTTTTTGAA ATTTTTGCCTGTAAAATCGTTAT 300 292 chrII 12286314 cb25.fpc1402a Cb2 37.938 37.938 I-9 ---------/TTTTTTGGG 1 GAAGTAAAAGTAAAAGCAACTGG CACTTCTAATACCCCCTAGATTT 302 311 chrII 12494020 cb25.fpc2260 Cb2 40.407 40.407 I-16 ----------------/GAAACTTCGGACGTCG 1 TTTGTTTTCCAAAACTTACAGAT CTTCTACCTCCACATCAATGAC 300 316 chrII 12527523 cb25.fpc2260 Cb2 40.407 40.407 D-8 AGAGGGAA/-------- 1 TGAATCTAAAGCTATCTCGTTTG AGAATTTGAACGAAAAAGTGTAA 297 289 chrII 13185150 cb25.fpc4181 Cb2 46.128 46.128 D-12 CAAAAAAAATTT/------------ 1 ATTAGTCCAAAATGTCGAAAAA AAAGGGAAAATGATGGGTAG 324 312 chrII 13614769 cb25.fpc0305 Cb2 49.961 49.961 I-8 --------/CATTAATA 1 TTCAGATATTTCAGGTTGTCAAT TAGTCATGGAAATTGTTGACTTT 302 310 chrII_random 1205189 cb25.fpc4087 Un I-7 -------/CGCTCTG 1 GATGGTCCTGTTATCAAGAAGTA CTATCACTAGCTGATGGAAGAGA 299 306 chrII_random 1423660 cb25.fpc4131 Un I-7 -------/CGATTCC 1 ATGGACCTTGTAGAATCCAATA GTCCTGTTGAAACCAAAAAC 295 302 chrII_random 1705023 cb25.fpc4131 Un I-29 -----------------------------/AATCGAGCTCAAAGTTGACAGTGTGGGGC 1 TTCAGAGTTCCATTTAAAGTTTTT TTTCAGAAAAATTCCTGATAATAA 333 362 chrII_random 1886081 cb25.fpc4243 Un D-9 TCACTAGTC/--------- 1 GATATGTGTCAAACGGACTTCTA GCAATGCATTTATAAACTTTGAG 295 286 chrII_random 2000018 cb25.fpc4243 Un D-11 GCGGCTATACG/----------- 1 TCTTTAGGACAGAATTTCTCAAA CCGTTTCTTTATTGACTGTTTT 300 289 chrII_random 2045876 cb25.fpc4243 Un I-17 -----------------/TATCAATTTTGGCGAAA 1 AAAAATTTGGAAAAATCTAGAAAG GTCGAGTTTCGCTATCAATC 314 331 chrII_random 2080535 cb25.fpc4243 Un D-15 GGGCCGCAAACGACA/--------------- 1 CTCAAATTTTAGTGAATGCTGAT GATAAGAGCACATCAGAAAAAGA 295 280 chrII_random 2116458 cb25.fpc4243 Un I-10 ----------/GTGCATGGGT 1 ATAATTTAGATGCTCATGACCTG ATGAAACCGAACTAGAGTAGTCA 298 308 chrII_random 2193386 cb25.fpc4243 Un I-9 ---------/AAGCACTAC 1 TCCTCTTTTTCAATTTTCTAGTCT GTCTCAATTGCTAAATTCAGTTG 300 309 chrIII 656676 cb25.fpc4030a Cb3 1.23 1.23 I-30 ------------------------------/GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 AAAATCAACTTGAAAATCATAAAAC TTGCTCCTGTTTCATTTCTAAT 299 329 chrIII 1163585 cb25.fpc0010a Cb3 6.07 6.07 I-18 ------------------/CAACAGATTCTGGGGCAG 1 AATGTCTCCGTCAATGTTGT TAATGTCCCTTTAATTTCAGCTA 298 316 chrIII 1430240 cb25.fpc2587 Cb3 6.07 6.07 D-10 CAGCCTAAAA/---------- 1 TGAAAATTGTGCTTGTTCATT GTTTGGCCTAGAAAACATACATA 299 289 chrIII 1791193 cb25.fpc2587 Cb3 6.07 6.07 I-21 ---------------------/TCTGAAAATGACTATTTTAAG 1 GCTAACTTAGGCTTAAGAATCGT AAAAATAGTCATTTTCTGGCTTA 282 303 chrIII 1855102 cb25.fpc2587 Cb3 6.07 6.07 D-17 TAAAAGGGGGCGGGGCC/----------------- 1 AACAATTCAAAAACCCATATTTA AAAGTTCTGAAACGGATATATTTT 297 280 chrIII 1880094 cb25.fpc4153 Cb3 12.46 12.46 I-11 -----------/TCTGAAAAAAT 1 CGAGAGAGTACTGAGAATTGAGA AATGGCTTATTTTTCTGGATTT 287 298 chrIII 2141562 cb25.fpc4341 Cb3 14.3 14.3 D-7 AGAGGGA/------- 1 CCTTAATCCACTATTCATGGAC CCTGGAACAACAACTACAGTAA 296 289 chrIII 2280953 cb25.fpc4341 Cb3 14.3 14.3 D-7 ACCCAGG/------- 1 GATCCATCTCCGATTCTACTATT ACTCATGCACTTTAGAAAAACAA 289 282 chrIII 3732180 cb25.fpc2976 Cb3 21.77 21.77 I-12 ------------/TCTCTCTCTCTC 1 GTCACACCTTGATTAGTGATTTC TCGAACTTGTTCTAGACAGAAAC 301 313 chrIII 8376031 cb25.fpc4079 Cb3 24.84 24.84 I-17 -----------------/TTTCGATCGAAAAAAAT 1 CCTACATCAATCGCACTGTT TGGTTGTTTTTGAAGTCTCTG 380 397 chrIII 10822328 cb25.fpc4224 Cb3 36.53 36.53 I-8 --------/TAAGGAAA 1 AAATTAAAAATATCCAAAAAGTGG CGCCTGTAAAATATGAAAATTAC 305 313 chrIII 10822461 cb25.fpc4224 Cb3 36.53 36.53 I-8 --------/GGGGGGGG 1 TTTCAGAAGAAAAACGAAAAATA TAATTTCGAAAATTGACTGTTCT 291 299 chrIII 13174827 cb25.fpc4426b Cb3 39.93 39.93 D-7 TTTTTTT/------- 1 ACCCTCTTTACCATTCTTGTATC TCATCTGGAGTTGTACGAAAC 301 294 chrIII 13515421 cb25.NA_102 Cb3 41.69 41.69 D-16 AGAGAGAGAGAGAGAG/---------------- 1 TCTACACAGATTTTAAAACAGACC AATTTTCACATTTTCGATTACAA 295 279 chrIII_random 753310 cb25.fpc4174 Un I-11 -----------/GAGAGAGGGAG 1 GCACAAGTCTCTTCCTCTCTTAT TTCCCTCTCTCAATTATAGTTCC 297 308 chrIV 227602 cb25.fpc0010b Un D-9 CAACGCTTA/--------- 1 TATAATTGTTTAAAGGTGGAGGA AAAAGTCACACCTGACAGTGA 289 280 chrIV 326128 cb25.fpc0010b Un I-8 --------/TTTCAGCA 1 TCTGAAAACTGAAGATGAAGAGA CCAAATTGTTACACAACTTTTCT 301 309 chrIV 452298 cb25.fpc0010b Un D-10 GATTTTTCGC/---------- 1 CATCCAAAAATACGTTGTATCTC ATTAACGGACATGATAAAAGGTT 295 285 chrIV 829204 cb25.fpc3752 Cb4 2.5647 5.0969 I-7 -------/GAAATCT 1 TGAAATCTTCTGGATTATTTTGA CGCTAATGATAACTTGGTTCTAA 302 309 chrIV 1987862 cb25.fpc4250 Cb4 7.8753 7.8753 D-17 ACCACAATTTTCAGCTA/----------------- 1 AACATAAGAAATGTTGTGGTATGA TAATTTTTGAACGGAAACTACTG 299 282 chrIV 2304293 cb25.fpc4250 Cb4 7.8753 7.8753 I-10 ----------/TTGCCCATGC 1 TAGGTTTCCGAAGACAACAC TTGGTTAGAGGATGGTAGAGAGT 300 310 chrIV 2726676 cb25.fpc2501b Cb4 10.9809 10.9809 I-7 -------/TTTGATG 1 CAATAGCTAGAATGAAGAGAAACA AAGAGAGAACCAAAGAAGTCAGT 300 307 chrIV 2902535 cb25.fpc2501b Cb4 10.9809 10.9809 I-17 -----------------/GTGAAAAACTACAGTAA 1 TTCAAAAACCTATAAATTTCACC TTTTAATTCTAGTTCAAACTTGTCA 277 294 chrIV 3000483 cb25.fpc4382a Cb4 12.263 12.263 I-8 --------/GATGACGC 1 GAATCGTTTTGAGTCACTTTG TAGTAGTCTGGTAACTCCCATTG 294 302 chrIV 3000977 cb25.fpc4382a Cb4 12.263 12.263 I-7 -------/TTGACAA 1 TAAAAGACTTACGGAGTTACAGC GAAAGAACTCGATATATTGTCTGA 296 303 chrIV 3603253 cb25.fpc3857c Cb4 12.9342 13.5631 D-11 ATTCTTTTTTA/----------- 1 ATTTATCCGGTTGCTTCATT GCTAGAGACGAATAACAAGAAAA 289 278 chrIV 3811757 cb25.fpc4260 Cb4 17.6194 17.6194 D-20 TCTTGGTTCAAAGAAATTCC/-------------------- 1 GTCTTCTTATCATCGTTTCCTTA TGTAATTGCGATTCAAAAATAGT 297 277 chrIV 3823367 cb25.fpc4260 Cb4 17.6194 17.6194 I-15 ---------------/TGTATTCTTTTTCAT 1 TATACCCCCATTTATTGTTTGTA ATGATTCACCACGTTTATCTTC 298 313 chrIV 3922698 cb25.fpc4260 Cb4 17.6194 17.6194 D-12 TTGAGTTAAAAT/------------ 1 AAAACCAGTTCATGTCATTCTAA CTCTCAATACCCATACTCACATT 300 288 chrIV 3986889 cb25.fpc4260 Cb4 17.6194 17.6194 D-22 TATATATATATATATATATATA/---------------------- 1 AAAAACCTGAAGGAACAACAT CATTAGAAACCTTCATGAAACAG 298 276 chrIV 4044300 cb25.fpc4260 Cb4 17.6194 17.6194 D-9 CTAAAACCA/--------- 1 GTTATTTTTGAAGTCAACAGTTTG TTTTAAACGATGTACTGACTATGAA 302 293 chrIV 4236396 cb25.fpc4260 Cb4 17.6194 17.6194 I-12 ------------/TTTTATGGCAAG 2 ATTTTGAAACGGGAAAATAAA CGCAATTCTTGTATGTAGTAGGT 300 312 chrIV 4578682 cb25.fpc4260 Cb4 17.6194 17.6194 I-9 ---------/TTTCTATGA 1 AATATTGTCTTTTGAAATGCATAC AGAATTAATTTGGCAGTAAATCA 290 299 chrIV 5440252 cb25.fpc0143 Cb4 18.1974 18.1974 I-19 -------------------/CGCTGCTTTTCGTTTTTTT 1 GAAAAATCGGAACTGACAAA TGGGTGAAAGTTTAGTTTGAA 366 385 chrIV 5967890 cb25.fpc0143 Cb4 18.1974 18.1974 D-11 TTTATATAAAA/----------- 1 AAAAGAGTGGAGAGAACCTTTAG ACCTATTTTCGTGAAACTTTCTT 297 286 chrIV 9240319 cb25.fpc4152 Cb4 18.1974 18.1974 D-19 TTTTGATTTTTTTTTTTGA/------------------- 1 TCAAGTGATCGGATTAATTTTAG AGTGTTGCAGATCATTCAAATA 301 282 chrIV 9361622 cb25.fpc4152 Cb4 18.1974 18.1974 I-19 -------------------/CTCTGGTTAGTAGATGTAG 1 AAACAAAGATTCTTCAAATTTCTC GAGAATATCGATTTGTCAGCTC 297 316 chrIV 9801859 cb25.fpc0039 Cb4 18.1974 18.8686 D-8 GGAGAGAG/-------- 1 TTTTGAGTTATCAAGGTTTGAAG ACAGAATATGTCAAGGACGATAC 300 292 chrIV 10531535 cb25.fpc0039 Cb4 18.1974 18.8686 I-19 -------------------/GCTCAATTACCTCGATTTC 1 ATCCCATATTTCCTCAAATAGAA ACGTTAAAATGCGACAGAAG 295 314 chrIV 11356997 cb25.fpc0081 Cb4 20.018 20.018 I-12 ------------/ATGTCGCAGGAT 1 GGCTATTTCCATCAAGATTAAC TGCCTAGAGTGTTTGAAATAGAA 319 331 chrIV 11405188 cb25.fpc0081 Cb4 20.018 20.018 D-8 ATTGGAAA/-------- 1 GTGTGGATCAGAACCTATCG TTTGGTTCTTTGTTACAGTATTTG 299 291 chrIV 12820285 cb25.fpc0065a Cb5 23.0725 53.7768 D-12 ATTTGGTGGTTG/------------ 2 ACACCATTAGGACTGACAGATT TGAAACGTTCAATTTCTGTG 253 241 chrIV 13347893 cb25.fpc4217 Cb4 29.5282 29.5282 D-20 TTTCGGAGATAACTGATTAT/-------------------- 1 GGATTAAGAATAATGGGAAACTT AAAGTTTTCTAGCGTCATGTCTA 295 275 chrIV 14142040 cb25.fpc3835 Cb4 37.5236 41.1551 I-17 -----------------/GAAAGTAATATTAGAAT 1 ACCATTAGAGATAATGGGAAAAT TATCTTTAGTCGGTCTGATAGGA 297 314 chrIV 14456779 cb25.fpc2328 Cb4 42.3897 42.9612 D-7 CCCTAAC/------- 1 CATTCAAAAGTTATCATTCAAAAA GATAATCACATTTTTAGCCACAG 300 293 chrIV 14775775 cb25.fpc4347 Cb4 43.5529 44.1377 I-10 ----------/CCCCCCCCCC 1 TTTTTATCTAAACGTTCCCTAACT ACTGTCATCGGGACATTTTA 297 307 chrIV_random 155385 cb25.fpc4042 Un I-9 ---------/GAAGTTTAA 1 ATTTTCTTCACAAACTTTCAACA GGGAAATAAATGTAGACAAATGA 299 308 chrV 1048700 cb25.fpc2454b Cb5 0.6536 0.6536 D-8 GAGAGAGA/-------- 1 GGTAATCTGGTGTAATCCATTG GTTTGTTTCGACAAATCAGAAT 298 290 chrV 1469078 cb25.fpc0022a Cb5 1.8732 1.8732 D-7 CAACGAT/------- 1 CCATGTAGAGGAGGAAATCTTAT GAGTTTGGTGAAAGGATCTATG 299 292 chrV 1970444 cb25.fpc2114 Cb5 2.5021 3.1557 D-10 CGCATTTTTG/---------- 1 AGAACAAAATGAACAAAACCTAA TAAAGTGATTTTATTGCCGTATG 299 289 chrV 1970447 cb25.fpc2114 Cb5 2.5021 3.1557 D-8 CTGGTAAC/-------- 1 AGAACAAAATGAACAAAACCTAA TAAAGTGATTTTATTGCCGTATG 299 291 chrV 2226201 cb25.fpc4202 Cb5 3.1557 3.1557 I-7 -------/GACTTCC 1 AGTTAAGCTATCACTTCCGTAGC AGGAGTAAGAAGTAAGAAGAAGGAG 300 307 chrV 2226503 cb25.fpc4202 Cb5 3.1557 3.1557 I-22 ----------------------/TCTCTCTATATTTTTTTTTCCA 1 CTTATGTGCTCCTGTCTCTATTC AGTTTTCAGATTTCAACAGATTC 300 322 chrV 3374666 cb25.fpc2310 Cb5 6.9679 6.9679 D-8 CCATGAAC/-------- 1 GTACCCATGTACCCATGAAC CTTGAATAGTAGGTCAAATTTCTTT 307 299 chrV 3655412 cb25.fpc0023 Cb5 8.2837 8.2837 I-7 -------/AAATTTT 1 ATGCCAAACTATATGGTTCAAT CAGACTTGACTCGTCACAATTA 300 307 chrV 4292348 cb25.fpc0023 Cb5 8.2837 8.2837 I-23 -----------------------/AAGTAGGAAAAAAATATGATTTG 1 TGTCTAGACCAGGTAATGAAAAT TGGTTTGTGGGTTAATCACT 343 366 chrV 4890741 cb25.fpc2887a Cb5 9.6537 12.357 I-8 --------/GGAAATTT 1 ATTTTTGTCGGAGATTACAGAAT GTTTTGATTTTGTTGGTTAAAAA 299 307 chrV 4924069 cb25.fpc2887a Cb5 9.6537 12.357 D-7 TTCCATT/------- 1 TTTTTCAAACTTCTGTAAACTTCA GGTATGCATTCTACCGTGAC 287 280 chrV 4924108 cb25.fpc2887a Cb5 9.6537 12.357 D-10 CTTAACGCAG/---------- 1 TTTTTCAAACTTCTGTAAACTTCA GGTATGCATTCTACCGTGAC 287 277 chrV 4924197 cb25.fpc2887a Cb5 9.6537 12.357 D-7 AGAAAAA/------- 1 ATAAGAGTGAGGACGACAGC GGATTTTTGTAGATAGGGTATGC 373 366 chrV 5699675 cb25.fpc2051 Cb5 16.4133 16.4133 I-8 --------/TTAAGGGA 2 GTCAGTTAACTCGATTTGTTCAC TCGAATTTTTCAAGTTTTGACT 289 297 chrV 5928686 cb25.fpc4470 Cb5 17.0669 17.7381 I-7 -------/TAAAGCC 1 AAACATCTGAAACTGTCAAAATC TGGATTTTTGAAAACAAACTG 300 307 chrV 10820563 cb25.fpc4126 Cb5 20.9763 22.2264 I-10 ----------/ACATATGGAT 1 CGACTTCTTTCTATTTCAGTCAT CCTATTCATCTAGTTTCCAGACA 300 310 chrV 11063723 cb25.fpc4126 Cb5 20.9763 22.2264 I-8 --------/ACACACAC 1 CATCTCTGCTGACATAAAACATT GAATTTTGAGAATTTGAAACAGA 299 307 chrV 11214610 cb25.fpc4126 Cb5 20.9763 22.2264 I-21 ---------------------/CAGTTGGCACATTTCTGATAT 1 CTGTCGAAGGATTCAATAAACTA AGAGAAAAGGGTTCAATGAGTAT 291 312 chrV 11408926 cb25.fpc4126 Cb5 20.9763 22.2264 I-8 --------/TTTATTCC 1 AATATCAGAGGTTCATTTTCAGA CAAGATACACATAACGACAGACA 298 306 chrV 11903957 cb25.fpc0090 Un D-24 ATTACATTATATATTACTTAATTA/------------------------ 1 AATCATGACCACAAGTTCAATTA GAATTCTTTCAGTCACAACATTT 295 271 chrV 12006957 cb25.fpc0090 Un D-16 TAAGGAAAATTAGTTC/---------------- 1 CAATTGATTTTGTTTGGAAATTA CAAAATTTAGCAGAAACTCAAAA 295 279 chrV 12008622 cb25.fpc0090 Un D-10 ACTCTAGTTT/---------- 1 GTAGAAAAAGAGCAGCAGGAT TTTTTGAAACTTTGAGAACAGTTA 300 290 chrV 12237642 cb25.fpc0090 Un I-11 -----------/TAAACAGAAAG 2 GACCAATTATGGTCTATTCAAAA ACCCTGAAAATGACAGCTATT 299 310 chrV 12864483 cb25.fpc0090 Un D-28 TAGTGGATGTTTATATTTTGACCATTTT/---------------------------- 1 GCAGACCTATAATTGTGCATATC TCAAGAATCCGGAATAAAAA 396 368 chrV 12864630 cb25.fpc0090 Un D-11 GACAGCCGAGC/----------- 1 GCAGACCTATAATTGTGCATATC TCAAGAATCCGGAATAAAAA 396 385 chrV 13368045 cb25.fpc0090 Un D-8 TTTCCAGA/-------- 1 TATGGAGAAAAGATTGATGGATA ATAAAAGGGGAATTGTATGTTTT 300 292 chrV 13378562 cb25.fpc0090 Un D-7 GTTTTTT/------- 1 TCACTTTTGGAATTTCATTCAT AAAAATTCCTCTTCTGATTTCTG 300 293 chrV 13437535 cb25.fpc0090 Un I-7 -------/CAACTTT 1 AAACAACAGTTTCTGGAATTTT AATAGACTAACAGAGCACGACAT 302 309 chrV 13437561 cb25.fpc0090 Un I-7 -------/GTTCTTC 1 AAACAACAGTTTCTGGAATTTT AATAGACTAACAGAGCACGACAT 302 309 chrV 13477229 cb25.fpc4063 Cb5 37.0083 37.698 I-20 --------------------/AGAAGTTTGCAAAAACTATA 1 TTACCTAATGATCCATGAAAGAG CCACCTAGACAAAAACTTAACTG 302 322 chrV 13746442 cb25.fpc4382b Cb5 37.698 37.698 I-10 ----------/TGCGCTTCGA 1 TTGATCAAGATAAATGCTCTTTG TATCATCGAATTATGTCTCTGGT 300 310 chrV 13856750 cb25.fpc4031 Un I-24 ------------------------/TATTTTCAGATTTTAAAAATTTAG 1 ACTCCTCGAGAGGCATATTTA CAGCAGTTTTAGTATTGGATCAG 297 321 chrV 14132867 cb25.fpc4426a Cb5 44.6993 44.6993 D-10 GTTTTGAATA/---------- 1 GCAAATACAAAATTTCCGTTTA TTTCTGAATCTTCAAACTCATGT 299 289 chrV 14132878 cb25.fpc4426a Cb5 44.6993 44.6993 D-8 GCATCACA/-------- 1 GCAAATACAAAATTTCCGTTTA TTTCTGAATCTTCAAACTCATGT 299 291 chrV 14516531 cb25.fpc4109 Cb5 46.0692 46.0692 D-11 GCTGCCCTAGT/----------- 1 AGATCCAAACTCAAACCTCTTAT ACTTAAAATTTTGCGAAAACAG 291 280 chrV 14564355 cb25.fpc4109 Cb5 46.0692 46.0692 I-9 ---------/TAGTATAGT 1 AAAATTCTCTCATCCTCATTAGC ACTCCAACGCCTACTACTCTATT 296 305 chrV 14564431 cb25.fpc4109 Cb5 46.0692 46.0692 I-8 --------/GAAAGAAA 1 ATCCGAGATGACACATATTTTTA CATCCATTCATCGAATATCTTAT 299 307 chrV 14594219 cb25.fpc4109 Cb5 46.0692 46.0692 I-16 ----------------/AAAAATTCTAATATTC 1 AAAAGATGTCCTGGAAGTGAC CAGGATTTTGTGTCTTTTGAGTA 371 387 chrV 14692782 cb25.fpc4109 Cb5 46.0692 46.0692 I-7 -------/GCGGCCC 1 CCCAACTGATAAAACTCTCTGTA TTTCTACGGAATTTTGGATTT 295 302 chrV 15225383 cb25.fpc0129 Cb5 53.7768 53.7768 I-27 ---------------------------/GATTAGCTTCAAGAAAAAAGAAAGGTG 1 TGAAACAAAAAGAAACTTAGCTC ACACTCATAAAAATCGGAAATC 301 328 chrV 15842374 cb25.fpc0129 Cb5 53.7768 53.7768 D-16 AAAGAAGAACAACGAA/---------------- 1 GATTTCCTGAGACAATTTTTGTA GACATGAGGATGAGGAAAAAG 300 284 chrV 15845740 cb25.fpc0129 Cb5 53.7768 53.7768 I-10 ----------/CCAATAATTG 1 GGATACTATTTTGCACACGTATT CTGGTTGTTATTGAGAGTGAGAT 299 309 chrV 15855442 cb25.fpc0129 Cb5 53.7768 53.7768 I-8 --------/ATTAGAGT 1 ACATCTGACGTAAAAGAAAATTG AAAACCTAAAACCTGGATACTCT 300 308 chrV_random 952705 cb25.fpc0156 Un D-9 GTCTAATAA/--------- 1 AATATTAGGCACTCCAAGAAAAT ACAGCACTGAAGAATATCAAACT 300 291 chrV_random 2458797 cb25.fpc4194 Un I-16 ----------------/GGGACCCAGGGACCCA 1 ATTTCGGTCAGAAAATGAGA TATTGGCAATTTAGCAGAAAG 373 389 chrX 1425186 cb25.fpc4033 CbX 0.6623 5.6449 I-10 ----------/CTCTCTTTCT 1 AAAACCTGAAGTTACTTTTTCAA AGGCTATTCTCGTTTGTGTCT 300 310 chrX 1425451 cb25.fpc4033 CbX 0.6623 5.6449 I-11 -----------/AGAGGAGAAAA 1 CTGAAACTGATGAGAAATCTACG AATTTTTCTTCTTCTCGCAGT 300 311 chrX 1878388 cb25.fpc4033 CbX 0.6623 5.6449 I-19 -------------------/AGCCCACCCACGGCCGGAC 1 GGATTTACGTTTTCTAGCTGAC TGACAATAAATTCATAGCTCAAA 299 318 chrX 2556024 cb25.fpc4033 CbX 0.6623 5.6449 D-10 AGAGTTTAAT/---------- 2 GAATATCGTCTCAAAAAGAACAC GTAAGGATGTTTTGAAGTTTTGA 296 286 chrX 3000271 cb25.fpc4033 CbX 0.6623 5.6449 D-11 CTATTATATTT/----------- 1 ACAAAACTAGATTAGAGGCTTCA GTGAAGACAGTTCAGTTTTTCTT 300 289 chrX 3019503 cb25.fpc4033 CbX 0.6623 5.6449 D-7 CAAATTT/------- 1 CCAAACAGAATAAAAGTGAGAAA ACTGATTCTACTTGGGCTTTTAT 301 294 chrX 3019506 cb25.fpc4033 CbX 0.6623 5.6449 D-7 ATTTAAA/------- 1 CCAAACAGAATAAAAGTGAGAAA ACTGATTCTACTTGGGCTTTTAT 301 294 chrX 3872507 cb25.fpc0045 CbX 9.5228 9.5228 I-19 -------------------/AAAACAACATGAGAAAAAA 1 GAATCAAAAAGAAGACAAAAAGTT GTCTGTGTTGTTGTTGTTTAGG 298 317 chrX 3872680 cb25.fpc0045 CbX 9.5228 9.5228 D-8 TTATAGAA/-------- 1 GTTGTTACCATTATACACCACATC GACACTGTTGCCATAATCTAACT 294 286 chrX 4935573 cb25.fpc4069a CbX 9.5228 9.5228 D-16 TTTCTCTCTTCGAAAA/---------------- 1 TTCTAGATTCACAGAATTCTCTCTT TGATTTTTGAGTGGAGTTAATTT 303 287 chrX 4994161 cb25.fpc4069a CbX 9.5228 9.5228 D-8 TGTAAGAA/-------- 1 GCTTCTTCTTCCACTTATCATT TTTACGAGACCCCCTATAAAA 297 289 chrX 4994168 cb25.fpc4069a CbX 9.5228 9.5228 D-9 CGGCGAAAG/--------- 1 GCTTCTTCTTCCACTTATCATT TTTACGAGACCCCCTATAAAA 297 288 chrX 5264111 cb25.fpc4069a CbX 9.5228 9.5228 D-15 GCTTCATGAGCTCTA/--------------- 1 TATAAAATTTTCTGGCGTTTTTA TGCCAAAATTTCTGTAGTAAATAG 300 285 chrX 5402499 cb25.fpc4069a CbX 9.5228 9.5228 D-7 AAAAAAA/------- 1 AAAATTGCAAAATTCAAGTTAGA TTAAAGGGGTTTTTCAGTTATTT 300 293 chrX 5688893 cb25.fpc4069a CbX 9.5228 9.5228 I-32 --------------------------------/GAGCCAATGGGAGCCTGGAGCCGGAGCCAATA 1 ATTTGAAAACACTGATGGTTAAA GATATGATATGGGTTTGAATTGT 299 331 chrX 6029329 cb25.fpc4069c CbX 10.9118 10.9118 I-16 ----------------/TCAAATCTTCGTGATT 2 ATTTTATTTTCACGCAGTTTCTA ATTGACACTTTACCCCCTATTTA 304 320 chrX 6029602 cb25.fpc4069c CbX 10.9118 10.9118 D-8 CACCATGA/-------- 2 ATCTCCTAAATAGGGGGTAAAGT TAATATGGAATTGGGACAGAATA 296 288 chrX 6029617 cb25.fpc4069c CbX 10.9118 10.9118 D-8 AGATCAAC/-------- 2 ATCTCCTAAATAGGGGGTAAAGT TAATATGGAATTGGGACAGAATA 296 288 chrX 6108055 cb25.fpc4069c CbX 10.9118 10.9118 D-28 TAGAACCTCTCTTAGAGAGGTTCTATCA/---------------------------- 1 TCTAAAGACGGTACAAAGAACAT AATATCCTCTATTCGTTCATCGT 295 267 chrX 6878983 cb25.fpc4066 CbX 12.1622 12.1622 I-25 -------------------------/CTCTCTCTCTCTCTCTCTCTCTCTC 1 GAATATCCACCTCAGTCATATTG CTGTAGTGGGAGGAAAGAAAA 300 325 chrX 6879106 cb25.fpc4066 CbX 12.1622 12.1622 I-24 ------------------------/TGAGATTCTGAGATTCTGAGATTC 1 TTTTCTTTCCTCCCACTACAG GAAAACGAGACTTTCCTAATTTC 295 319 chrX 7085365 cb25.fpc4066 CbX 12.1622 12.1622 D-13 TCCAGCAGTGATT/------------- 1 TCAGGTGATTATGAATAATGAAAG TGTCATATTTATTTGAGCCAGTT 298 285 chrX 7276009 cb25.fpc4066 CbX 12.1622 12.1622 D-14 GAGGCCACAAAAAT/-------------- 1 ATGATGCTTTTTCTCTTACAATAA CACCAAGAAAACGCTAAAAA 279 265 chrX 7585890 cb25.fpc3857a CbX 12.1622 14.6745 I-17 -----------------/ATGGCCATTGAGAAGGA 1 AGCAGTTGAGAAGAGACAGAAG GGTGGTATTAGAGCAGATTCATA 300 317 chrX 7698497 cb25.fpc3857a CbX 12.1622 14.6745 D-12 TCTACACAGAAA/------------ 1 CGTAGTTTGGAACAAAAAGTTAG ATCTTATGAGGATTGGATCTAGC 300 288 chrX 9414081 cb25.fpc3857a CbX 12.1622 14.6745 D-23 AGATCTCGTTAGCTTCGTTGACA/----------------------- 1 TATTGGAAATTGGGTTCAAA AGATGTATACCGCCATCAAC 357 334 chrX 10601293 cb25.fpc3857a CbX 12.1622 14.6745 I-7 -------/TTTAGAA 1 GATTCTCATGAAAGTGCTACAAT CTAAGACCTTTTTCTATTCGTTTC 298 305 chrX 14672065 cb25.fpc0003 CbX 20.0954 20.7089 I-8 --------/CGTTTCTT 1 ACATTGTCTAGTTTGCCATAAAT TTTCTCCAACTTTTTCTTCTCTC 300 308 chrX 16028187 cb25.fpc4023 CbX 20.7089 24.0659 D-30 GGCCCAATTTTTTTTGGCCCAATTTTTTTT/------------------------------ 1 GTTACAAATTTCTGATTGATCGT TATGTTTGCTAAGCATAAACTGA 296 266 chrX 17922121 cb25.fpc0829 CbX 27.3783 34.1035 I-8 --------/TCTCTCTC 1 CGACTCAATTCGAGATAGTGTTA TGAATAATCACATGGAAAAAGAC 301 309 chrX 19003188 cb25.fpc0829 CbX 27.3783 34.1035 D-9 TTCTTGGGA/--------- 1 AAAGAGACTGTTGCTTTTGTTC TTCGACTTATTCCTCTCTTTTCT 299 290 chrX 19162728 cb25.fpc0829 CbX 27.3783 34.1035 I-17 -----------------/GAACTATTGTCTCTCAA 1 TTGGCAAATTTTTCAAACTAA AAACATAGAACAGGGAGTTGAG 299 316 chrX 19166795 cb25.fpc0829 CbX 27.3783 34.1035 I-8 --------/CTGCCCTT 1 GGGACTGAAAGAATACTGTAGTTG GTTAAATTTTGGCTCCCATTA 299 307 chrX 19322383 cb25.fpc0829 CbX 27.3783 34.1035 D-7 AAAACAT/------- 1 ATAATTCCAGTTATGCAGAGGTA TGGTATTTAGGCTAAGAACAGC 295 288 chrX 19430440 cb25.fpc0829 CbX 27.3783 34.1035 I-14 --------------/TTTTTTTTATTTGG 1 TTGAAGAGAACACATTAAACACA GTTTTTCAAGAACACCAGTATGT 295 309 chrX 19430460 cb25.fpc0829 CbX 27.3783 34.1035 I-14 --------------/AAATCAGACAATCT 1 TTGAAGAGAACACATTAAACACA GTTTTTCAAGAACACCAGTATGT 295 309 chrX 19590791 cb25.fpc0829 CbX 27.3783 34.1035 D-7 CTTGAAC/------- 1 GATCAAATGATGGTTGACATT GTGAGAAATCCTTCTCTCAGATT 298 291 chrX 19590794 cb25.fpc0829 CbX 27.3783 34.1035 D-9 TTACAACTT/--------- 1 GATCAAATGATGGTTGACATT GTGAGAAATCCTTCTCTCAGATT 298 289 chrX 19590943 cb25.fpc0829 CbX 27.3783 34.1035 I-7 -------/GTATTGC 1 TAGAATGAATCCTAGCAATAACC GAGATAATTTTGTAAAACGATTTGT 298 305 chrX 19848448 cb25.fpc0829 CbX 27.3783 34.1035 D-40 TTCTGTCAGACAGTTTCAGATTTATGATTTCAGATTTATG/---------------------------------------- 1 TCTTGAATAGTTAAAGAGCAACAA GCTCTTTCGATATGTCTATGATG 299 259