Integrated Genetic/Genomic Map of C. briggsae - Chromosome chrX

C. briggsae > Integrated Map > Chromosome chrX

Chrom

chrX

Ultras

Genetic

Map

547956

fpc1402c

0.66

*cb12080

633195

fpc0071b

0.66

*cb2376

707053

fpc4033

0.66

*cb16537
*cb21766
  *cb21200
   *cb22278
    *cb18017
     *cb11789

4473579

fpc0045

8.41

*cb20692
*cb7993

4913208

fpc4069a

8.41

*cb16698
*cb17685

6249782

fpc4069c

9.05

*cb12375

6311841

fpc0083

9.69

*cb8973

7257350

fpc4066

10.30

*cb14730

7458611

fpc3857a

10.30

*cb11422
*cb2444
  *cb2629
   *cb19797
    *cb1971
     *cb1800
      *cb13128
       *cb10631

11499721

fpc0091a

11.64

*cb11728
*cb11740

11840306

fpc2397

11.64

*cb6849

13367313

fpc4044b

13.61

*cb16518
*cb14864

14787844

fpc0003

17.07

*cb1691
*cb9641
*cb9659

15220240

fpc4023

17.68

*cb9664
*cb8211
*cb8248
*cb6150

16351819

fpc4403

18.36

*cb5748
*cb6111

16795831

fpc0106

21.03

*cb19019
*cb18839

17362265

fpc0829

21.67

*cb18742
*cb7474
*cb15550
*cb21042

20379957

fpc2334

27.69

*cb3581

SNP Markers for Genetic Map of chrX
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb12080	0.66	chrX	547956	cb25.fpc1402c	547956	p1: GGTTCCCATATACTACCTCTGTT p2: AAAAAGCCACTCTACATCTGAA p3: CCTGCAGGTGTGCTCCA
cb2376	0.66	chrX	633195	cb25.fpc0071b	20779	p1: GCCCATATCAGTTTATGTTTTT p2: CTACTTTCAGAACGGTGAGTTTA p3: GCTGTGTCGATAACTGTCAAACACA
cb16537	0.66	chrX	707053	cb25.fpc4033	2405500	p1: AAATGAAGCAAGAATACGAGAA p2: AAAACAATATGCTGTTGGATGT p3: TCTTAATGAGATTTCGACCAGAATATTC
cb21766	1.8251	chrX	998488	cb25.fpc4033	2114065	p1: GAGTGTATGAGCAATGTGTGTAA p2: ATCCCTAATCGTTCGATTCTAT p4: CTGATATAGGGGTTCATGAGGCC
cb21200	3.6658	chrX	1945243	cb25.fpc4033	1167310	p1: TAAAACAGTCAAAAACTCACACA p2: AAAAACCTCTTGTCCTACATTTC p3: CGACGTTTTCCGGCTTCCATT
cb22278	4.9646	chrX	2775610	cb25.fpc4033	336943	p1: AAGCAGGACTTTTCAGAAATTAT p2: GACTAAACATTTTGCATGGTAGA p4: CATGGTAGATCTAATTTGAACTTGCAGT
cb18017	4.9646	chrX	3066537	cb25.fpc4033	46016	p1: TGAAATTGGTAGTGTATTTCAAAG p2: TTCAAGTCTGAGAGCTTTGTG p4: GAGCTTTGTGATTAATTAAAATATTTTCAAAGAGC
cb11789	4.9646	chrX	3101284	cb25.fpc4033	11269	p1: AACAAGTCGGTCCAGTATAGC p2: ATTTTTCAGGTTTCATTGGTC p4: GCGTAATCCATGCACCGCTC
cb20692	8.41	chrX	4473579	cb25.fpc0045	1360927	p1: GCTCATTCTTCTTAGCATATTCA p2: GAGAGAAAACAAGAAGATTTCAA p3: TCTGTTTTGACCCAAATTGTGGC
cb7993	8.4142	chrX	4551358	cb25.fpc0045	1438706	p1: AAGGACATTGTTTGATTGTCTAC p2: TGAGAGTGATAGTAGTCGTTTGTC p4: TTGTTTTTTCTTGTTTAGAAGATAATAACAACTTCTT
cb16698	8.41	chrX	4913208	cb25.fpc4069a	137914	p1: ACACTATGTTGAAAGCCAAAA p2: CTTCGATACCTGTTGTTGAGTA p4: AGTACCGATTTGCAATAAGGTACGATA
cb17685	8.4142	chrX	5044223	cb25.fpc4069a	268929	p1: TTTCCAAGCTGTTTTCTTATGTA p2: TCTTGCGATTTTATAAGATTTTC p4: ACTAGAATCAATATAAACATTCGAATGTTTTGTCT
cb12375	9.05	chrX	6249782	cb25.fpc4069c	512230	p1: TTTATGCAAATATCAAGATGTGA p2: TTTTTCAGAACAATAGGATATGG p4: TCGCCAAATGGAAACAAAATCAGTT
cb8973	9.69	chrX	6311841	cb25.fpc0083	335053	p1: AGCGTTTATCAGAGTTTTATAGGT p2: GTATGAGAAGATGAGTTGGATTG p4: AATTTTTCTGCTTACTGTATCAATAGGAAAGA
cb14730	10.30	chrX	7257350	cb25.fpc4066	148609	p1: CGGAATTACGAATTTACAGAAT p2: TTCGAAGAACTATCTCGACACT p4: GGTTATCCGGTGAGTTTTTCAAGTT
cb11422	10.30	chrX	7458611	cb25.fpc3857a	52553	p1: AACCAATAAAATCCTTTCTTAGC p2: ATCCTAATTAATTGTGCTGAGTC p4: GATTTGGTGAAGTTGACAATTGATTG
cb2444	10.3016	chrX	7683876	cb25.fpc3857a	277818	p1: ACTCCTTCGCTCAAATACATAC p2: TTTTATTGAAATTCGGGAGAG p3: GCTCAAATACATACAAGCTTGGTTGA
cb2629	10.9819	chrX	9129168	cb25.fpc3857a	1723110	p1: AGACTTTGAGAAAAGAAAAGGAG p2: TACCAGTTATTGCTGATGACTTT p4: TGCCAACCAAAACCTTCGCT
cb19797	10.3016	chrX	9446760	cb25.fpc3857a	2040702	p1: ACACCCTATCTTCACCAGAAA p2: AATGGTTAGAGAGAAAACACTAGC p3: GCAGAAAAGAGCGAGCGGG
cb1971	10.9819	chrX	9547221	cb25.fpc3857a	2141163	p1: TGTATGTCTTTATTTTAGTGCTTCA p2: CAAACACATAACATCATCTGAAA p4: CCGCAATTTGACAATAGTTGAAAAGC
cb1800	10.9819	chrX	10270196	cb25.fpc3857a	2864138	p1: CCACCTACATTCCATCAAAA p2: GTGTGTTGTTCAGAGTTGATGA p3: GGTACAGCTGGACAAGGAACT
cb13128	10.9819	chrX	10533031	cb25.fpc3857a	3126973	p1: CAAGACAGGATATTTGAAACAGT p2: TATACCACGTTTTAAAGAAGACC p3: CAAAAACACTGACTTAGGGTTGCA
cb10631	11.6442	chrX	11236787	cb25.fpc3857a	3830729	p1: AAGTTAATGAGGCTAGGAAGAAG p2: ATGTGTTTCATGTGTTAGTTGTG p3: CTCAAGAGGATAAGGGTACTTTCTTTCT
cb11728	11.64	chrX	11499721	cb25.fpc0091a	24813	p1: TTGCAAGTAGTCTTGATGTCTAA p2: ATCATATTTTCGACCATGTCTC p4: GCTAAATAGATACCGGTTCTTGGTAGTTT
cb11740	11.6442	chrX	11673086	cb25.fpc0091a	198178	p1: TTTTCTTTCTTCTTTTCCTCTTC p2: ACGGTGTGTGTACACTATTCATT p4: CGAATTGATGGACACCGTTAAAGG
cb6849	11.64	chrX	11840306	cb25.fpc2397	22056	p1: ATTGTTTCCGTATAGGAGGATTA p2: TCACATCCTTGTTTATCATTGTA p3: AATATTCTAAGAAACCCGAGAGGATAT
cb16518	13.61	chrX	13367313	cb25.fpc4044b	592254	p1: CAATTGATAAGTTCGACACTACAC p2: GTGCGGTAATTATATTGAACAGT p4: GCGGTAATTATATTGAACAGTCTATAGAATTC
cb14864	16.3456	chrX	13940104	cb25.fpc4044b	1165045	p1: AATGAAGAAATTCAGGTCAATAA p2: CATGATAAAGGGATGTTTCATAC p4: CAGTTCAATTTCAAGTCTTTTGGTTATGTT
cb1691	17.07	chrX	14787844	cb25.fpc0003	777142	p1: ATCACAGTCAAAACGAGTGATAC p2: ATGATACGTGGTCTCTTGATG p3: TGATACCGTAATTTAATATTTCTCGAAGTCTG
cb9641	17.0651	chrX	15054274	cb25.fpc0003	1043572	p1: TGTTGTTGATATTTTTGTATTTTTG p2: CATCCAACAATGTTTATGACAG p4: CTAAAATACTCTTCACATTTGAGCTATTGTTG
cb9659	17.6786	chrX	15164955	cb25.fpc0003	1154253	p1: ACGGGAAACTAGAAGTATTAACC p2: CTTCTTCAAACATGTTCAGTCTC p4: TCTCTAATTCTCCAATTACCACCGTT
cb9664	17.68	chrX	15220240	cb25.fpc4023	889941	p1: TACAATCAATACCAAATCGAGAG p2: GCGGAATTCTATCATCTTTACTT p3: GCACCCACGGTACAAAAATATTGCTA
cb8211	18.3588	chrX	15662900	cb25.fpc4023	447281	p1: AGAAATGCATTGTTCTCTTTTC p2: CTTTTTCTGGAAACTTTAACTCA p4: GATTCTGTAAATGGAGAAGAGATTTCTGAAA
cb8248	18.3588	chrX	15739895	cb25.fpc4023	370286	p1: TCACAGTTCTTAATGTTATTGGTC p2: CTCCATTGATTGTGGTTGTT p3: AGAACCTTCAAACTTTTTTAGAAATTTTCTTTGT
cb6150	18.3588	chrX	15893204	cb25.fpc4023	216977	p1: GAACAAAGTTTTTGTAAAATGAAA p2: TTCCATATTTTCAGTTCTGGAC p4: TCAGGTTTCTATAAATCAAAAATAAGGGTCC
cb5748	18.36	chrX	16351819	cb25.fpc4403	241539	p1: GTGGGGATTGTCATTCTTATT p2: GCTCTGTACTTCTTTCACTTTCA p3: TCCTTTTCTCGTCGTCATCCC
cb6111	18.3588	chrX	16710001	cb25.fpc4403	599721	p1: TTCTGTTTTTCGTTCAAAATTC p2: AAGTCTGCTCGCTTGAGATA p4: CTGAAAAAAAAACATAATCAAAAGAACATTTTTTATTGT
cb19019	21.03	chrX	16795831	cb25.fpc0106	70023	p1: TTGACTCAACGTTCATTCTTAAT p2: GATGTCTATGAGATGCATTTACC p3: GACGACACTGCAGACTAACAGT
cb18839	21.6713	chrX	17274690	cb25.fpc0106	548882	p1: CATTCTGGGAAGAATATCTACAA p2: CAAATCTACTTCTATCGGGATTC p4: AGATAGATTTTCCCAAACTTGTACAAGATG
cb18742	21.67	chrX	17362265	cb25.fpc0829	2837878	p1: GAATGTGTACCTCAACTCTGTTT p2: ACCCCTCACCACTCAATATAA p4: GTCGGCTGATGCAACGTG
cb7474	26.1286	chrX	18589667	cb25.fpc0829	1610476	p1: AACTTGGATGTTAAAATCTGTGA p2: TTTTGGTACCCACCAAATTAT p4: GATTTTCTAGATTTTGAGATTTTCGAAATCTTCAA
cb15550	25.3767	chrX	19039073	cb25.fpc0829	1161070	p1: AAAAGAAGACACCATCTTCTACA p2: GCTTCAACTCGACAATGAAT p4: TCATCCAACGTTTCCTGTAGTAAGT
cb21042	27.6912	chrX	20100511	cb25.fpc0829	99632	p1: CCGCTTGAGACTCATAGATTAC p2: AAACAGGTGTTCTCTTCCTATTT p4: CTTGTGAGCAATTTGAAAGCTGAGA
cb3581	27.69	chrX	20379957	cb25.fpc2334	179715	p1: AAGTAAGAATTCACCGATTTTTC p2: ACTCGTAATATACGATCAAAATGA p4: CTCTCTTTTTATAAACTACGGATTTGATTATATATTCG