Integrated Genetic/Genomic Map of C. briggsae - Chromosome chrV

C. briggsae > Integrated Map > Chromosome chrV

Chrom

chrV

Ultras

Genetic

Map

954249

fpc2454b

0.65

*cb8719
*cb8773

1141887

fpc0024

0.65

*cb13240

1392087

fpc0022a

1.87

*cb21107

1687668

fpc4095

1.87

*cb3578

1840393

fpc2114

2.50

*cb8459
*cb8380

2115162

fpc4202

3.16

*cb2439

2340160

fpc4263

5.09

*cb21790
*cb8284
*cb11784

2646567

NA_025

5.74

*cb16713

2797228

fpc4334b

6.36

*cb4604

2842019

fpc2310

6.94

*cb8300
*cb3365

3867747

fpc0023

8.26

*cb16783

4984655

fpc2887a

9.63

*cb17749
*cb17729

5526513

fpc2051

19.55

*cb431
*cb457

5844990

fpc4470

18.89

*cb392
*cb59

7621226

fpc2220

23.51

*cb2964
*cb3127
*cb13350
*cb3883

9526181

fpc4126

24.12

*cb9955
*cb9693
*cb22547

11847933

fpc2501a

26.67

*cb19272

13460684

fpc4063

40.15

*cb11419
*cb11355

13777067

fpc4382b

40.84

*cb11774

13985981

NA_073

42.80

*cb4798

14143800

fpc4426a

47.84

*cb2086

14730542

fpc4109

49.21

*cb12896

14881655

fpc0065a

56.92

*cb15951

14999944

fpc2888b

56.92

*cb12967

15249004

fpc0129

56.92

*cb10494
*cb10621
*cb8129

15990402

NA_031

58.11

*cb19816

SNP Markers for Genetic Map of chrV
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb8719	0.65	chrV	954249	cb25.fpc2454b	104310	p1: ATAGATTCCATTCCCGTTGTA p2: TATTTCTCTTTTTCAGCTTCTCC p4: CCAGCTTACGACTTGGCCAA
cb8773	0.6536	chrV	1036379	cb25.fpc2454b	22180	p1: GTCACTATCCTTCCACAATTTAC p2: CAGTTACTTTTATACAGGAACATCA p4: GCAGAGGTAATCCTACTATGAATCTCTTATC
cb13240	0.65	chrV	1141887	cb25.fpc0024	211796	p1: AGAAAGATTCCATTGTCAGTGT p2: TAGCCATAGATCAGGTGATTG p3: CTTGCCTCCCCGACGC
cb21107	1.87	chrV	1392087	cb25.fpc0022a	38305	p1: CTTCGTGATGGATAGATGAAC p2: GACAAGGACCATATAAAGGAAGT p4: GCCTACTACTACTACTGTCAGATTACGCTA
cb3578	1.87	chrV	1687668	cb25.fpc4095	70215	p1: ACAAAATAAGACCTCAAACTTCA p2: AATCTCGATGGTCAGTTTGATA p3: TCAAACTTCAGTGTGTCATTCAAAACA
cb8459	2.50	chrV	1840393	cb25.fpc2114	137548	p1: GCGAGTAAAGTCGATGAAAA p2: CAGATGACCGAATCTAAATAAAG p3: GACACCTTCTGGACAGTGTTCA
cb8380	3.1557	chrV	1993196	cb25.fpc2114	290351	p1: TTGTTTAATTGTCGATTACCACT p2: TCTCACAAAACCGTCTCTTC p4: TGATATTCTATATCGATGGAGAGCCAAC
cb2439	3.16	chrV	2115162	cb25.fpc4202	28137	p1: TCCAAAATCTCTCAGTTTGTTTA p2: CCTTGACCCACTAGAAGAAAA p4: CCCACTAGAAGAAAAAAAAACTGACCA
cb21790	5.09	chrV	2340160	cb25.fpc4263	10642	p1: AATTCCGTTTCATTTGATTG p2: AAATATTCAAAACTTCCCAAAAA p4: CCCAAAAATTCGGCAACTCCA
cb8284	5.0914	chrV	2492677	cb25.fpc4263	163159	p1: ATGTCAAAAGTTTGCCTAAGAG p2: ACACATCTGTTGTTAGTCGTCTT p4: GGCCTCTTATTTTATCGCCGGTT
cb11784	5.0914	chrV	2619124	cb25.fpc4263	289606	p1: AAAAATGACTCACCATTCAGAC p2: TCCCTCTAGTTACACTTTTCTTTC p3: TGAAGCCGGGAATTTCGCA
cb16713	5.74	chrV	2646567	cb25.NA_025	7802	p1: AGAATCCAAGATTTTCCAACA p2: CTTCCTTTTCATGATGTGTGT p3: GTCTTATACCTGCTCAACGAACAAC
cb4604	6.36	chrV	2797228	cb25.fpc4334b	147835	p1: CTAATTTCACCCCAAACTCAT p2: TCAAGTGTTTCGTCGTACTTC p4: TCAACTTTTGGGGTCAAATTGGAG
cb8300	6.94	chrV	2842019	cb25.fpc2310	12744	p1: AACAACCCCTCAGTAATACCTAC p2: ATAGAAAACCATCCAACCAGT p3: TGTGAAATGGAGCATGTTGAATTT
cb3365	6.9425	chrV	3444387	cb25.fpc2310	615112	p1: ATCTACCTGAGAACCAAAGAAAG p2: CTGACGAATGAAACTCCTCTAT p4: CCTCTATGATTCTCTGAAGTCGCT
cb16783	8.26	chrV	3867747	cb25.fpc0023	405776	p1: GAATTCGGATATTCACAGTAGAC p2: GTGGCTGTTCCTCTTCATTAT p3: TGACAATTGTAGATGAGACACCATGTA
cb17749	9.63	chrV	4984655	cb25.fpc2887a	115552	p1: GCAGAATCCCTTTTACAGTTT p2: GGTTACTATGATTTCTTCGGAGT p4: AGAAATTCAAGCGAAATTTCATAAATTTGTGAA
cb17729	12.3317	chrV	5072256	cb25.fpc2887a	203153	p1: CTCAACAGACTCTTCTTGGTTC p2: CAGAAAAGTTGTTCCCAAAA p3: ACTCTTCTTGGTTCCTCATACTTTTCTT
cb431	19.55	chrV	5526513	cb25.fpc2051	229080	p1: CTGTTGAAAATTTGGATTGAG p2: AATGTCGATTAACTTTAGCAGAA p4: TCGTTTTGTTCTTTATACAACCATCA
cb457	19.5456	chrV	5720667	cb25.fpc2051	34926	p1: CTTGTATTCAAGATTGGATTTGT p2: GATTCAGTGGTCACATCTCTACT p3: TGCAGAACTTCTAAAATAGGAAATGTGAAA
cb392	18.89	chrV	5844990	cb25.fpc4470	1692553	p1: TGTTGGTAGGAGCTTTTGTAGTA p2: AGTTCAGACAGTTGATCAAAAAC p4: TCGAAATGAATCAAAATTCAGATCAGTCTC
cb59	18.2209	chrV	7450535	cb25.fpc4470	87008	p1: AAAATACAAAAGTGCACGAATAC p2: GAGCTCATCTAACTAGTCTGTCAA p4: CGTGAAACTGTTCGATGTGACGAT
cb2964	23.51	chrV	7621226	cb25.fpc2220	1831956	p1: AATCTATTCCAACCTGGTAACAT p2: AATAGGTTGAACTTTTGGGTTAT p4: TTGGGTTATAGTTTTTGCTTCTAGAAATAT
cb3127	24.1209	chrV	8463515	cb25.fpc2220	989667	p1: AATACTTGGAGCAATAAGGACTC p2: TCCTGAAAGATTTTGTTTTACTG p4: TTCTTTTCTCCCTTTTTCCAGGTTG
cb13350	24.1209	chrV	8703355	cb25.fpc2220	749827	p1: CAACTCGAGGTAAGCAGTGT p2: AGCTCACTCAAGGAAATGTTATT p4: TGAGATTCCATTCAACTCCACCAA
cb3883	22.249	chrV	9381227	cb25.fpc2220	71955	p1: CTTCATTTGTCATCTCAAACACT p2: GTGAACGTACAGTTTGAAAGATT p4: ATTCTTTATTGTGCTGCCAATAATATACAGA
cb9955	24.12	chrV	9526181	cb25.fpc4126	72900	p1: TTCAAAAACAATAACATCGATTA p2: TCGCAACTGTATTCTCATATTCT p3: TCCTAGAAAACTCAAAAGTGCGAGAATA
cb9693	24.7499	chrV	10668885	cb25.fpc4126	1215604	p1: GATGTCACAAGGAAAAGATGATA p2: GAAATGCTCAAGTGTTAATCTGT p4: AAGGTAATTGATAATCATAACCATCGAAACAA
cb22547	25.371	chrV	11527565	cb25.fpc4126	2074284	p1: GACTCAAACGCTCAGAAATG p2: ATTTGCTGGTTTAACTTTCTTCT p4: GGAGCACATGTTGTCCTGGA
cb19272	26.67	chrV	11847933	cb25.fpc2501a	246493	p1: GGATGGAAAGATCAGAGAATC p2: GCGAACTATCTCTTCTGATTG p3: AGATCAGAGAATCGGATGGGCTG
cb11419	40.15	chrV	13460684	cb25.fpc4063	177696	p1: AGCTCACAGCACACATAAAAT p2: AAATCTCGGTTATTCCCTGTAT p4: GCCAAAGCGAAAAGTTCTCTGG
cb11355	40.8426	chrV	13635800	cb25.fpc4063	2580	p1: TGTCTAATTTTTGATGTGTTTTG p2: TTTTGAAGTGAATTATGACCTAAA p4: CAGCGAGAAGGCAAGGATGATA
cb11774	40.84	chrV	13777067	cb25.fpc4382b	138588	p1: TATTCAAAGTTCATGAAAGGTTC p2: TTAGTACGCAACCTGATACTTCT p4: TCTTCTTATCTGTCGATTTTTCAAAAAGTGTAT
cb4798	42.80	chrV	13985981	cb25.NA_073	23694	p1: TTACGGTATTTTTAGGGTTTAGC p2: CTCCAAAATTTCAAATCTCTACA p4: CAGAGACCCTCAGGTCTTCAAG
cb2086	47.84	chrV	14143800	cb25.fpc4426a	99228	p1: TAAATATGTGTCAGTTGTGTCCA p2: ATCAGGTAAATCAGTTGATGAAT p4: TGTTCTCTTATCAGTTGAACACTTTAAATACATT
cb12896	49.21	chrV	14730542	cb25.fpc4109	317960	p1: CGTTAATATATTTGTTGGGGTTA p2: ACAATGCAGTTCAAGGAAGTAT p4: GCCTGCCTTCTCTGCGTCT
cb15951	56.92	chrV	14881655	cb25.fpc0065a	190009	p1: TAAGTTGGCTCAAAAATATCATC p2: TTATCCCTTTTACTGACCAGAAT p4: CTATATGATCTCTATCCATATTTGTACAAATCGAC
cb12967	56.92	chrV	14999944	cb25.fpc2888b	52780	p1: CAAACTTCTCACAATTTGATTTC p2: CGCGAATTTCTAATTTTTCTAAT p4: CTAATTTTTCTAATTTAATTTTTCTGATCTTTCCATTTGT
cb10494	56.92	chrV	15249004	cb25.fpc0129	40145	p1: CTGTTTATCGAACTCATCGTAGT p2: AACGAGTTCAACAATGAAGTG p4: GCGATTCGTCGATTTTGTATGT
cb10621	56.9214	chrV	15469648	cb25.fpc0129	260789	p1: AGCTAGACTCAATGGTTACAATG p2: AAATAACCCAGATTCCTACCTAA p4: CATCCTCTGCTTCTGAGCTCTC
cb8129	56.9214	chrV	15530072	cb25.fpc0129	321213	p1: GCTACTTTTCATCTTCTCATTTG p2: ATTTGTGACCTCCTATCTCATC p4: CCATCCTTTTGTCTTCATATTGCTCATT
cb19816	58.11	chrV	15990402	cb25.NA_031	35194	p1: TAAAAAGATGGCTGAAAAATCTA p2: CTTGTTGGACCAGAAAGAGTA p4: TCCTAGAAGACGAAATATAGCGTTTAGTC