Integrated Genetic/Genomic Map of C. briggsae - Chromosome chrIV

C. briggsae > Integrated Map > Chromosome chrIV

Chrom

chrIV

Ultras

Genetic

Map

1426951

fpc3752

2.56

*cb23125
*cb23135
*cb22832

2293218

fpc4250

7.88

*cb8821

2508273

fpc4118

9.19

*cb8147
*cb8176

2727996

fpc2501b

10.98

*cb17380

3089359

fpc4382a

12.26

*cb16748

3170931

fpc4382c

12.93

*cb2961

3343336

fpc3857c

12.93

*cb18435
*cb18346

4452895

fpc4260

17.62

*cb3790
*cb3750

4820534

fpc0143

18.21

*cb14731
*cb6423
*cb10874
*cb10995

6808664

fpc0110

32.34

*cb11584
*cb14228

8117943

fpc0063

32.34

*cb3606

8223491

fpc4152

32.34

*cb9283
*cb7745

9519049

fpc0039

18.21

*cb17206
*cb13592
*cb7750

11143862

fpc4069d

19.94

*cb3962

11261735

fpc0081

19.94

*cb16167
*cb16182

11574284

fpc2374a

31.05

*cb19643

11853697

fpc1570

31.05

*cb16852
*cb16809
*cb7791
*cb7823

12463505

fpc4090

20.58

*cb14873

12799467

fpc0065a

23.05

*cb15906

12944894

fpc4132

25.48

*cb18540

13114275

NA_087

41.46

*cb7589

13318965

fpc4217

42.07

*cb22825

13534368

fpc0107

43.50

*cb16054

13610561

fpc3835

50.07

*cb2090
*cb2293
*cb5108

14458153

fpc2328

54.94

*cb18281
*cb18329

14721541

fpc4347

56.68

*cb8552
*cb8535

15011731

fpc3052b

57.83

*cb23314
*cb23233

SNP Markers for Genetic Map of chrIV
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb23125	2.56	chrIV	1426951	cb25.fpc3752	914522	p1: TCTGATAATTTTGAAACATCAGTTA p2: TCACATATCATAAAAACCTAAGTCA p4: AAAAAATAGGTCACAGTGATTTATTTCGAAAAATA
cb23135	1.9357	chrIV	1549138	cb25.fpc3752	1036709	p1: AAAAATTGCATACAGACCTACAA p2: CAGAAACTATTTTTCTGGTAAGTG p3: AAAATTCACAAATTAATCGAGATTTCGAAACATA
cb22832	5.0969	chrIV	1674668	cb25.fpc3752	1162239	p1: AGAATATGCCAATTTCTTCTCA p2: CTAATTCTTGCTGTTTCAACACT p3: AGTTTCTGGAGGAACTTGGAGAAG
cb8821	7.88	chrIV	2293218	cb25.fpc4250	483031	p1: AATTTGGATGAACTGAAGTATTG p2: CCTTTTTGAAATAGTGTTTTCTG p3: GTATTGTGATATCTGAATCTTTTATCCACGA
cb8147	9.19	chrIV	2508273	cb25.fpc4118	107159	p1: ATTAAATAGCTGCGATAACAGAA p2: TCTTTCTTTTAGGTCGTCACTC p3: GCGATAACAGAAGAAGAACAGTTTTCT
cb8176	9.776	chrIV	2604834	cb25.fpc4118	203720	p1: TAGGAGTTGGGACCATACCT p2: CATGATCTCAGAGGTAGATTTTT p4: CTCAGAGGTAGATTTTTTCAAACTCATAGAAT
cb17380	10.98	chrIV	2727996	cb25.fpc2501b	28025	p1: GTCCAACAAGATGTATCGAAAT p2: GAAACTGAGCTAACTTCTTTGAA p3: CTGTGAGAGTGCCAGCTCC
cb16748	12.26	chrIV	3089359	cb25.fpc4382a	54942	p1: ATAACTGTCTGAGCTTGGTTGT p2: TAGAAATTGATTCCTGGAAACTT p4: GGAAACTTCAAATGCACTAATAATGC
cb2961	12.93	chrIV	3170931	cb25.fpc4382c	26531	p1: GCTTTTCGTAATTTTTCTCAAC p2: CAGCAAATCTTGAATTTCTTTAT p3: ACACCGTTTTTCAGCGAATTT
cb18435	12.93	chrIV	3343336	cb25.fpc3857c	148248	p1: CTCAACGTCATCGAGAGAGT p2: ACAATGTCCATCAACACCAT p4: ATGAGCAATCTGTAGAAGCGGT
cb18346	13.5631	chrIV	3669148	cb25.fpc3857c	474060	p1: AAATTCAGCAACTCAAAAATGT p2: ATTTTCAAAACCGAGGAAAT p3: CAGGAAAAACATATTTCTCAAAGCATGAG
cb3790	17.62	chrIV	4452895	cb25.fpc4260	216198	p1: AAGGTGTGGAGTATAGAGGCTAC p2: TTTTGACATGTCTATCCATTTTT p3: AACGGAAATTACGGTTTCAAGAAGTTTA
cb3750	17.6194	chrIV	4491842	cb25.fpc4260	177251	p1: CTCAGACAACATCTGAAAACTGT p2: TAAGTCAGGTTTGCCTTATTTTA p4: CTAGATTTTCTGGTTTACGGTCATTT
cb14731	18.21	chrIV	4820534	cb25.fpc0143	1908937	p1: TGTGGATATATAGAAAAAGGGAATA p2: AGAGTGAAGAAAAGGAGAAGAAG p4: AGCTCTTTCTCTTCCTCTTATTTTCAAAATT
cb6423	18.2111	chrIV	6139120	cb25.fpc0143	590351	p1: GTTAGAAGAGAAGAGGGTGCTAA p2: ACTCGAGTTTTTGTGCATATTT p4: GGAGGACGTCGCCCGT
cb10874	18.2111	chrIV	6212806	cb25.fpc0143	516665	p1: GTTGGGTGGCCTTTTATTAG p2: ACAATCTTATCAGTTTTTGGAGA p4: TTTTTTTCTTGCTGATTACGCTGAAAAAT
cb10995	18.2111	chrIV	6660972	cb25.fpc0143	68499	p1: CACGAGAGATGTAAGCATTAAAC p2: AGAGATTTAGCTGAACTTCTAATCA p4: CAAGCAAACACGCGGAATGAAA
cb11584	32.34	chrIV	6808664	cb25.fpc0110	79094	p1: CGTAGAAATCTGTTAAAGGAGGT p2: AGAACTAGCGTACTTTGTCGTTA p4: CCGACTGACAAGCTGGCG
cb14228	32.3448	chrIV	7059732	cb25.fpc0110	330162	p1: GCTTGTTGATGATTTACTCTAGG p2: GCCATAGGATTGTTCTTCTATCT p3: AAATTAAATTAATCCTATTTGAGATCGAAATAATTCAGAA
cb3606	32.34	chrIV	8117943	cb25.fpc0063	756021	p1: TTGCTTCAAATCTAATTCTTCTG p2: CACTTTCCTTATCAACTCACCTA p3: TGATCACATTGATATACCGTAATCATAGTCAT
cb9283	32.34	chrIV	8223491	cb25.fpc4152	94070	p1: TTCACCAAACTACATAAAAATCAA p2: CCGTTTCAAATAGTTCTCAAATA p3: ACCAAACTACATAAAAATCAAACTGCTGAA
cb7745	32.3448	chrIV	8998770	cb25.fpc4152	869349	p1: ACTTACATGACAAAACGAAAGAA p2: AAATGGCTTCTCCTAAAACCT p4: CTTCTCCTAAAACCTTCTCACGACA
cb17206	18.21	chrIV	9519049	cb25.fpc0039	1122418	p1: ACCACTAACAATAAGTCCCTTTT p2: ACCTTCTCCTAGAATCCTACAAA p3: GGATTCCCAATTTCCGGTGTTCTT
cb13592	18.2111	chrIV	10498307	cb25.fpc0039	143160	p1: CGTCTCATTAATCGTATCAATTT p2: CAGGATACAAATGGAAATACAGT p3: GCCAACGGATAGGCAGTAGAA
cb7750	18.7891	chrIV	10637058	cb25.fpc0039	4409	p1: TTCTTCTGGTTGCTGCTACT p2: CAAGAGGAAGATGGTAGGTG p4: CCGAAATCGAGCCGAGCC
cb3962	19.94	chrIV	11143862	cb25.fpc4069d	28140	p1: CAAGTACCACTATTTCGTCTTTG p2: TAAGCAATCAGAAATCCAGTATC p3: ACACTTCGACCCCAACTGG
cb16167	19.94	chrIV	11261735	cb25.fpc0081	89634	p1: GGTCATCTCCTGTATCATCTTT p2: ACTCCTGCTAGTGTCACATAAAA p3: ATGACATCAAGTTAACACAATTACTTTCTCT
cb16182	19.9386	chrIV	11486710	cb25.fpc0081	314609	p1: TCTTTTATTTCTTGTCGTCAGAT p2: CTTCTTCCACTCATGAGCAC p4: GCGGAAAACTCTGAAATGTGTGA
cb19643	31.05	chrIV	11574284	cb25.fpc2374a	73759	p1: TGATCTTCTCACTTTGATGCTAT p2: CTAAACCTCATCTTTTCCATTTC p3: CATACTTTGCCATGGCGGC
cb16852	31.05	chrIV	11853697	cb25.fpc1570	39625	p1: AATCGACATATGTATCCGTAAAT p2: GAAAGCAGATTAGCAGATAAGG p4: GCAGATAAGGGTGATTACGGTTGG
cb16809	31.046	chrIV	11948885	cb25.fpc1570	134813	p1: CTTGCAGTCCATTATTTGAAG p2: CAAGAAACTCATTCATCAAAATC p3: CACAACGTTACCATCGGCTCT
cb7791	31.046	chrIV	12137589	cb25.fpc1570	323517	p1: GGTAAAATTTCAAAAATCCAAAC p2: GCAAAAGGATATCAAAACAAAA p3: AAGCGGCTTAGTAGTTTCTAAAAGTTG
cb7823	31.046	chrIV	12174707	cb25.fpc1570	360635	p1: CTGATAACTTGGAAGAGGAGAA p2: TTGGTGGACTCAAAGTAGAAAT p3: CCAGGTCCCAGTCGCTCA
cb14873	20.58	chrIV	12463505	cb25.fpc4090	43051	p1: GGGATATGCATCATTATACTCTCT p2: CAAGAGATTTTTCGGAGTTTT p4: TTCGGAGTTTTTTAGAGTTGCAGTATG
cb15906	23.05	chrIV	12799467	cb25.fpc0065a	66011	p1: CCAAATTTGAGACTTCTAGACC p2: AACGAATAGAATGCATATGTCC p3: AAAATCAGATTTTCAGCCAAAATCC
cb18540	25.48	chrIV	12944894	cb25.fpc4132	79317	p1: GGATATCTGCCTTTTTGTTAAT p2: CGAAATTTTAGCATAAACTTGAA p3: TCTGCCTTTTTGTTAATTTTTGCATTCTT
cb7589	41.46	chrIV	13114275	cb25.NA_087	9666	p1: GAGAACAATTGGGGGACTAC p2: TCTTAGTGTACAAACTCTCCAGAA p3: ATTGGTGGAGAGGACAATTCAAGTA
cb22825	42.07	chrIV	13318965	cb25.fpc4217	134218	p1: CCGCAATACTACTCCATTCTTA p2: TTTTTGGCTCTCAAAACAAT p3: CCCATTTATACATAATTTTTTGATCATTTCCCT
cb16054	43.50	chrIV	13534368	cb25.fpc0107	81086	p1: CTAGCACTGTCAAAACATCAAA p2: AGAAGTGTAATGGATTCAATGAT p4: CATTCCAACCGGCTTGCC
cb2090	50.07	chrIV	13610561	cb25.fpc3835	788095	p1: AGGAGAGAGACTTTTGGATTTT p2: TGTCTTTTCTGCTGTTCTCTTAG p4: CGAAGATCCCAGTGGTCAATTGAG
cb2293	52.4512	chrIV	13848486	cb25.fpc3835	550170	p1: CCCTAAATAGCTCTAAACTTGTCT p2: TGAGGAAATTCAGCATTTTAAG p3: GAGTTTTGCTTCAAAATTTGACTTCGAG
cb5108	53.7013	chrIV	14181916	cb25.fpc3835	216740	p1: CTAATGTACCGGAAATTAAGTCA p2: ACCATTTCAAAAATCGATAAATA p3: CTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGA
cb18281	54.94	chrIV	14458153	cb25.fpc2328	169736	p1: TCCCTATCCATACCAACTTCTA p2: CCATCCAAAAATTCAAACTC p4: GGATTTGTCGGCATTGATAAGAGTGA
cb18329	55.5074	chrIV	14490088	cb25.fpc2328	137801	p1: TTTAAGCTGACTTTACCGAGTAT p2: GACACTTTCAATTGTCTGTTGTT p4: TCGGGAAGTTTTTTTTTCCTCTAAAGTT
cb8552	56.68	chrIV	14721541	cb25.fpc4347	93553	p1: ATTTCCTCCAATAATCTTCAAAT p2: ACTGCTCTCTTCCTTCAGAATA p3: TCAAGCTTCTGAATTCTGACGTCT
cb8535	56.0991	chrIV	14751224	cb25.fpc4347	123236	p1: CTTGGTTACGGTAGCAAAAA p2: TGGACTTCAATTAGAGAAAATGA p3: AAGCACAGTTTAACATTCAAGTTAGGTT
cb23314	57.83	chrIV	15011731	cb25.fpc3052b	96868	p1: CACATGTCCTTGTTTCTCTTTAC p2: CGACAGGAGTATCTCTTCAAAA p4: TCAGCGAAATGATGTTCCTTCGA
cb23233	57.8334	chrIV	15279696	cb25.fpc3052b	364833	p1: TGATCTTTCAATTGGGGATA p2: CTTCACACATCTCACAAGTCAT p4: CGCGACTGCAAAAGCATTCG