Integrated Genetic/Genomic Map of C. briggsae - Chromosome chrIII

C. briggsae > Integrated Map > Chromosome chrIII

Chrom

chrIII

Ultras

Genetic

Map

244956

fpc4030a

1.23

*cb2665

1175006

fpc0010a

6.07

*cb2958

1261565

fpc2587

6.07

*cb20769

1891383

fpc4153

12.46

*cb20758

2153870

fpc4341

14.30

*cb19183

2380437

fpc4069b

14.94

*cb10042
*cb10088

2699993

fpc2187

16.84

*cb22597
*cb22622

3249396

fpc0103

20.02

*cb17390
*cb17382

3441085

NA_195

20.02

*cb6119

3614380

fpc2976

21.24

*cb12087
*cb12098

4666599

fpc2234

23.02

*cb12108
*cb5220
  *cb21057
   *cb21075
    *cb10632
     *cb5362

6544265

fpc4044a

23.67

*cb8819
*cb8776

6667046

fpc2203

23.67

*cb1979

6837362

fpc4079

23.67

*cb22040

8859723

fpc0201

25.68

*cb5262
*cb5359

9290084

fpc4154

26.37

*cb17443

9653919

fpc2193

27.59

*cb22149
*cb22189

10067486

fpc0002

29.97

*cb22714

10585420

fpc2887c

31.25

*cb9186

11167733

fpc4224

35.36

*cb13529

12089461

fpc4010

35.36

*cb10275

12444380

NA_132

35.36

*cb19477

13084264

fpc4426b

38.77

*cb23143

13392235

fpc4013

39.90

*cb15337
*cb15330

13496198

NA_102

40.52

*cb12100

SNP Markers for Genetic Map of chrIII
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb2665	1.23	chrIII	244956	cb25.fpc4030a	196565	p1: TAAAGTAACTTCATCGGAATCTC p2: ATCAGGGTATACGGTAGCTCTAA p4: GCCTTGACTAGACTTGAATTTGGTT
cb2958	6.07	chrIII	1175006	cb25.fpc0010a	160938	p1: ATACTGTAACCGATGGAATTGT p2: AAACTTACCTATCCGAGTCTACG p4: CCAAACGATGAGCAATGGAAATTGT
cb20769	6.07	chrIII	1261565	cb25.fpc2587	604118	p1: CATTGCTCATCGTTAGTTCTAGT p2: TCGAAACTGATGTATTCCATATT p4: AAACTTTTTCTTCTTCTTCTTATCACAATTC
cb20758	12.46	chrIII	1891383	cb25.fpc4153	25601	p1: AGAGAAACGAATGGCTATGAG p2: ACAGACGACTTCCTTTGTTTT p3: GCTCCACTGGACAGAGGAC
cb19183	14.30	chrIII	2153870	cb25.fpc4341	41538	p1: TACTTCCCCATTAAACTTCATAA p2: ACTAAAAACATTGATCACCTTGA p3: GCTGCATGGGCGAATTT
cb10042	14.94	chrIII	2380437	cb25.fpc4069b	132026	p1: CAGAAAGAAATGACGAGTTAGAG p2: CGATCTTTGTCTGTTCTCAAATA p4: GTTTCTCATACTCAAATTACTCCAGATTT
cb10088	16.2594	chrIII	2495339	cb25.fpc4069b	17124	p1: TTATGGGTTATGCACAGTAGTTT p2: TAGAAACCTGATCCCTGTTTT p3: AGTGACGTGGCATGAGAAAAAATC
cb22597	16.84	chrIII	2699993	cb25.fpc2187	507130	p1: CTGTCTCTGCTGACTTTGTAATC p2: TGTAATCCAAGAACCTTTAAACA p4: GGGTTAGGCTCATCACAACACAAT
cb22622	17.4509	chrIII	2824554	cb25.fpc2187	382569	p1: TGTAGGTACTAGCAAACGATTTT p2: AGAGACACAGAAACCGAGTG p3: CCCGTTTCTCTTTTTTGTCCCTT
cb17390	20.02	chrIII	3249396	cb25.fpc0103	42174	p1: CAGTCTTTTCAATGAATTTATCC p2: GCAGTTGAGAGAGAATGAGAAG p3: TGTTTGGATGGGATACCATCTGAAAA
cb17382	20.0156	chrIII	3335715	cb25.fpc0103	128493	p1: ACTTGATCTTCTAGCTGGTTTCT p2: CACAAAGTTTCAAAATCTCTGAC p4: GCAAAATATGGATTTTCAGCCACG
cb6119	20.02	chrIII	3441085	cb25.NA_195	56109	p1: TGATAAAACAGGCGGATAAC p2: TCGCTTTCTCATTTTACTGTACT p3: CCGGGCCGAAAAGAGAAGAAA
cb12087	21.24	chrIII	3614380	cb25.fpc2976	117087	p1: CGGATGAGTATATTTGACATTTT p2: TAAACACTGTGGTTTTTGGTATT p4: CGTCCGTTTTCCAATTTCCGTTC
cb12098	21.2352	chrIII	3765584	cb25.fpc2976	268291	p1: GCTAACAATGAACCATTCAAC p2: AGCATGATACATATCAGTCAACA p4: CCTGTGGATTATGCTGATCAACATT
cb12108	23.02	chrIII	4666599	cb25.fpc2234	492935	p1: CTTCAAGACAACTTTTGACCTTA p2: CCATGATGTTTGGAACTTTT p4: AGTCGGGATTAAACTGGTGTATATTT
cb5220	22.4117	chrIII	4737256	cb25.fpc2234	563592	p1: AAAGCTATCTAGAAGGCTCTGTT p2: AGTAATCATCATAACTGGGGTCT p3: TCTCGAATCGACCCGGAGA
cb21057	22.4117	chrIII	5094315	cb25.fpc2234	920651	p1: GTCTCTTCATTTCATACGCTCT p2: AAAAACTGCTGAAGAATAACAAG p4: CCGGCATAAAACTAGCACAAAGCTT
cb21075	22.4117	chrIII	5138086	cb25.fpc2234	964422	p1: AGTCAGGGGAAAAACTTATTG p2: CAATTTTCTTCCCACTATCATAA p4: CATAATAATATACACAAAACAAAATTCGAATGC
cb10632	22.4117	chrIII	5509667	cb25.fpc2234	1336003	p1: CTGTCTGGACTTACAAAATTGA p2: TGTTCTTCACCAGAAGGAATAC p3: TTGAATTTAGAATTCCTTCTGATTTTCCAGA
cb5362	22.4117	chrIII	5559142	cb25.fpc2234	1385478	p1: CTATCCTTCATCTCGAATAAAAA p2: TACAACCTTTTCAAGCACCT p3: AGTGAGAACAAGCGGTGACG
cb8819	23.67	chrIII	6544265	cb25.fpc4044a	756652	p1: AATTTCATATTATCCCCCTTTT p2: GTATCTCTTTTCCCTCTTCACTC p3: CTGTCTTCCTTCCTCCCCAC
cb8776	23.6714	chrIII	6614173	cb25.fpc4044a	826560	p1: TAGAATAAGTGGACTGGATTGAG p2: CCCATTTTTCTGTGCTATCTAA p3: GGAACACGAGGCTGTGTGC
cb1979	23.67	chrIII	6667046	cb25.fpc2203	123890	p1: CACCAATAAAGTTTAGTACGTGTT p2: AACAAATTGACATCTCACTCAAG p4: GTCTTTTTTAGAGTATGCTCCAAACACA
cb22040	23.67	chrIII	6837362	cb25.fpc4079	46327	p1: TCTCATTTGACGGTGAACTT p2: CAAGAATCCATTTCTATCTGAAG p3: GACCTGAAAATATAAGGTGTCTAATGGAAC
cb5262	25.68	chrIII	8859723	cb25.fpc0201	305870	p1: GTTAATCCAGCTGACTGATTTC p2: GTTGATAGAGCACCTTGAAAATA p4: TTCGATAGGAAGGCGAGAGCTC
cb5359	25.685	chrIII	9111582	cb25.fpc0201	557729	p1: ATACTGCGTCTTGTTTTCTCTC p2: TGGCTGATTTAGAAACTAGGAG p3: CAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTA
cb17443	26.37	chrIII	9290084	cb25.fpc4154	317205	p1: ATCACGATAAGCGACAATTT p2: GATGCTTGAAAAATGAAAAACTA p3: ACGATAAGCGACAATTTTTGGAAAGA
cb22149	27.59	chrIII	9653919	cb25.fpc2193	46531	p1: AAAAGTGTACTAGCCAATGGTC p2: CTCAGATTGACTCCAAAACTTC p4: CCAAAACTTCCCTGGAAACTTTCTT
cb22189	28.1723	chrIII	9780191	cb25.fpc2193	172803	p1: GATTCTTTGATTATTCAGCTCAT p2: CCAATGGACAAGTTAGAAGTAAA p3: TGATTATTCAGCTCATAAAATGAAATTGTTCG
cb22714	29.97	chrIII	10067486	cb25.fpc0002	87901	p1: AAATCTCAAAATTGGCTTGTC p2: AAGAATATCCCATTTTTCTTGTC p3: TTTTCGAAAATCCTTGAAAAAATGTTCAAGA
cb9186	31.25	chrIII	10585420	cb25.fpc2887c	302303	p1: TAGAAATCGAGCTGGATGAG p2: TAAGAGCTACAGTAACCCAAAAC p4: CCCAAAACGCCTCAAATTTCCA
cb13529	35.36	chrIII	11167733	cb25.fpc4224	402325	p1: AATTGAAATTTGGGATTTTGA p2: GAATGCTCCAGAAGAAGATG p3: GCGATACTCTACAAACATCGATTTCTTCA
cb10275	35.36	chrIII	12089461	cb25.fpc4010	343708	p1: CAAGTCGTTCCTACTATGATGAG p2: TCTCGCAATAGAAACATAGTGAT p3: TTCTAGATTTTTCTGTGAAGAAATGAAGGAAT
cb19477	35.36	chrIII	12444380	cb25.NA_132	11112	p1: GATGAGCTCTTGTTGCATTT p2: GCAAGACGATCTACCATGAG p4: CAAAAAGAAGCGAAAAAACCCCC
cb23143	38.77	chrIII	13084264	cb25.fpc4426b	135526	p1: CCCATTATTCTTGATCTCTTATG p2: AAATGAAAGAAAGGAAGGAGTAG p4: TTTTCCCACGAGGTCCTTCTAATT
cb15337	39.90	chrIII	13392235	cb25.fpc4013	172346	p1: ATCCACGTAGTGATGAGACTG p2: TACAACCAATGGGAGTACTGTAG p3: GAGAATAAAGCAGTTTTAGATTTGAAATACATTTAAGA
cb15330	39.3371	chrIII	13439999	cb25.fpc4013	220110	p1: CTACCAGAGCATCCTCGTATT p2: TTTGGGGTGTTTTACACATATT p3: GGGCAGCCGAACAAAAACTTT
cb12100	40.52	chrIII	13496198	cb25.NA_102	9372	p1: TTATAATTTTTCCAGTTCCCAGT p2: ACATTTTTACAGTAGGCACTTTC p4: TCCATGAGTTCTCAGATTTCTCTACG