Integrated Genetic/Genomic Map of C. briggsae - Chromosome chrII

C. briggsae > Integrated Map > Chromosome chrII

Chrom

chrII

Ultras

Genetic

Map

1339598

fpc4114

2.38

*cb5083

1402746

fpc4168

2.38

*cb18765

1651636

fpc4292

6.96

*cb4553
*cb4572

2165243

fpc0071a

8.19

*cb16788

2560572

fpc3052a

10.69

*cb21859
*cb13137

3131271

fpc0011

11.88

*cb13016
*cb6254

4536997

fpc0072

20.86

*cb3415

4816851

fpc2454a

21.46

*cb15106
*cb15087

5294043

NA_214

19.07

*cb4597

5399477

fpc2888c

23.32

*cb22927

5802004

fpc0058

23.32

*cb6851
*cb7109
  *cb19956
   *cb5445
    *cb5486
     *cb16183
      *cb16363
       *cb10650

10280825

fpc4206

29.95

*cb3574
*cb4337
  *cb4239
   *cb19820
    *cb22656
     *cb22661

11793937

fpc4071

37.32

*cb19271

11936952

fpc1402a

37.90

*cb4574

12410399

fpc2260

40.37

*cb15583

13188945

fpc4181

46.09

*cb16865

13354302

fpc4055

46.70

*cb14181

13389443

NA_155

46.70

*cb21771

14144967

fpc0305

49.92

*cb13000

SNP Markers for Genetic Map of chrII
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb5083	2.38	chrII	1339598	cb25.fpc4114	101672	p1: ATATTCTCGATGAGCTGTGGT p2: GGGGAAGTAGTAATACAAGTCCT p4: CCAACAGGGACTCCTGGTTTAG
cb18765	2.38	chrII	1402746	cb25.fpc4168	25432	p1: GGATTACTGTACATATCTTAGCTTCA p2: GTTGAAATTTTTGGCATCATA p3: ACTGTAATCTTGCTTTCTGCAGC
cb4553	6.96	chrII	1651636	cb25.fpc4292	367053	p1: AATCAGATCTAAAGTGTGATCGT p2: AAAAAGCAGGTAGTTATGGGATA p4: TCTTGCACAGGAATTGCGATAATTAG
cb4572	7.5733	chrII	1728099	cb25.fpc4292	290590	p1: GAAGAGCTACAAAAATCTCAAAA p2: TTTTAGCTCCTCGTTTTCTTT p3: CGAAAAACTGTGAAAACTGTGAAAAGTAA
cb16788	8.19	chrII	2165243	cb25.fpc0071a	146455	p1: TACAGGAATATTCTGGTTCTGTT p2: GGGTTTCTCTTTATGAACTACAA p3: ACATCCAGTTCGATTTCCGGT
cb21859	10.69	chrII	2560572	cb25.fpc3052a	557382	p1: GGGAAGCATTCTTCAGTGTAT p2: TGTATATATGGTAGATACGTGGAAC p3: TGAAGACAGTTTTCCTAGTCTTCTAGTG
cb13137	11.2721	chrII	2750345	cb25.fpc3052a	367609	p1: CGGTAACTTCTGAAAAAGGAT p2: ATGATTATTGGTACGATCACATT p4: AGAATGCATATTTTGAGAACTGCAAAAAAT
cb13016	11.88	chrII	3131271	cb25.fpc0011	1070952	p1: GCTTTTCCATCTATGCTCAAT p2: ATTCTAACCTTCCTCTAGTGTCC p3: AGAATTCGCATTTTTCAGGAAGAAGAA
cb6254	13.0977	chrII	3565562	cb25.fpc0011	636661	p1: TGGAATGAATTCTGTGTATTTTT p2: AAAGCTAACGAAACTCTTGAAAC p4: GCTATATGTCCTGCACATCTAACTTTG
cb3415	20.86	chrII	4536997	cb25.fpc0072	334675	p1: GTATTTTTGATCGATTTTTCTGA p2: AGTTTTCAGTTCATTCGCTATC p3: CCCTGTACATAGACTGGCTTGT
cb15106	21.46	chrII	4816851	cb25.fpc2454a	57337	p1: TTACATTTGAGAAAAAGACACCT p2: TCACCTCCAAGCTAACATTATAC p4: TTGTAATGATTCGACTCGTGCTTTG
cb15087	22.7105	chrII	5050450	cb25.fpc2454a	290936	p1: TGTTGATATTGGACATATTTTGA p2: CTAGATTTGTCTCTGTTCCATTC p3: GCGTAATGTAATGGGGTGTGAAGA
cb4597	19.07	chrII	5294043	cb25.NA_214	6584	p1: CCTCCCTTCTTATTTTTACTGTC p2: CGAGATGTTTTCAGATCATTTTA p4: GGAACATTTTCAGTTTGTCGAACAGTT
cb22927	23.32	chrII	5399477	cb25.fpc2888c	92662	p1: AAGTTATCACATTTGCATTTCTC p2: GATTCCGGTATCTCAATAAAAAT p4: ACATTTTGCTCTTCTCGAGAGAAAAGA
cb6851	23.32	chrII	5802004	cb25.fpc0058	4161592	p1: ATTTTGAACTGTTAGCTTCACAT p2: TATATCTCACTGCAATTTTCACC p4: TGCAAAGAGCCCATATAACCTACC
cb7109	24.4931	chrII	6589397	cb25.fpc0058	3374199	p1: AACAACAGAGGATACTCACTTTC p2: AGGCACGTAGATAATGAAAAAT p3: CCCAAAAGAAGAGGCCGGA
cb19956	25.0849	chrII	6946429	cb25.fpc0058	3017167	p1: CTTTATACCGATTTCAGCATTTA p2: CAAACCATGGAAATTCTCTAAC p3: CCAATGAGAAACAACTTCCTCTCTCATT
cb5445	25.6697	chrII	7513542	cb25.fpc0058	2450054	p1: TCATTTCTCTCTCTGATTTTCTC p2: TTTCCTTATATCTGGTTTCTTGA p4: GAGAAAAGAGAAAGAAACCAAGAGATAA
cb5486	26.2477	chrII	7753240	cb25.fpc0058	2210356	p1: GATCGATCAGTAGGAGTAGAACA p2: GTGAAGGACAGCAGAAACTAATA p3: GATCAGTAGGAGTAGAACATCAAGTGATT
cb16183	26.8127	chrII	7983690	cb25.fpc0058	1979906	p1: GAGAACGTTCAAGGTTAGTTTTT p2: TATGTAGCCTCGATTCAACTAGA p4: GACACTAAAAATTCTTTTCTTGAAATACTCACTT
cb16363	27.9755	chrII	9114860	cb25.fpc0058	848736	p1: AAATACAGTACCTCCATTTTTGA p2: CACAGATATTTTTCGATTGATCT p4: TGTTGCTTGAAATTTTCATTCGGTCTAT
cb10650	28.6207	chrII	9363532	cb25.fpc0058	600064	p1: CTAAACTCTCGAACTGTTACCTG p2: CGTATTGTCGGAAATATACACTC p3: TCTGGATGGTATCGTTTGACATGAA
cb3574	29.95	chrII	10280825	cb25.fpc4206	317130	p1: ATCTCTACTGCTCACGTATTGAC p2: AACAACAGCTTTTACGATGTTAC p4: TGAATCACACCAACGACTTCTTCT
cb4337	30.5389	chrII	10501886	cb25.fpc4206	538191	p1: TGACTTTTCCTGTTTGATGAG p2: ATTTTCTTATCAGCAAAAATCTG p3: CCAAAGCTTCCCATGTCTCCA
cb4239	32.3573	chrII	10822777	cb25.fpc4206	859082	p1: AAAACCTAAACTGTCATCTTTGA p2: CTGAATTCTGATTGTGAGACAG p4: GGGCCTCCCACTATTCAGTTT
cb19820	34.7849	chrII	11536467	cb25.fpc4206	1572772	p1: AAGTTGTGGATTTTGTACATAGC p2: CTGACTCAGAAAATTTATCACCT p4: CGTTTTTATAAAGATTTGACTTCCGAAATACCT
cb22656	32.9287	chrII	11562956	cb25.fpc4206	1599261	p1: ACTACAAAATGAAATGGTCTCC p2: GAGAGCATGAAAACTGCATAAT p4: GCAAACAGGACATTCCCATCATT
cb22661	33.5348	chrII	11593784	cb25.fpc4206	1630089	p1: AAAAATTAAAAATTCCAGATCGT p2: TTCAGGATAATAGTGTTGGATGT p3: GCTCTTTGCTCAATGATTCAGAAGACT
cb19271	37.32	chrII	11793937	cb25.fpc4071	79427	p1: TCACTATTCTCACTGATCGTAATC p2: ATCATCCATTTTGTTTGAATAAC p3: TGCTTGTGAGTGATAACTAAATAGGTGT
cb4574	37.90	chrII	11936952	cb25.fpc1402a	76410	p1: TTTGAAGTTTTTCGTAAAAAGAG p2: AGGGAAAATGGGAAATACTG p4: GAAAATGGGAAATACTGTATTCCACTGT
cb15583	40.37	chrII	12410399	cb25.fpc2260	675755	p1: CCTGAAAGCTTGTATACCGTAA p2: AAAAATGCCTTCACTTCTGAC p4: GGATTAGCTTGTAGATAACGTCTTTGAAAT
cb16865	46.09	chrII	13188945	cb25.fpc4181	22768	p1: AAAATACAAGAAACAGCTTGAGA p2: GGAAGAATGTATTATTGGTCAAC p3: GCTTGAGAAAAGAGGATTTCGATGTAA
cb14181	46.70	chrII	13354302	cb25.fpc4055	19339	p1: GAGATACTGTGACTTGTTGATGA p2: TTTAGATGATTTTTGACCCTTTT p4: CCCTTTTTTGGGCCGCTTTTG
cb21771	46.70	chrII	13389443	cb25.NA_155	15703	p1: CCAAGAAGGTAATGAGGAAAT p2: TTTTACATGATTTTCAGTCATTTT p3: GGTAATGAGGAAATGGTGGAGCT
cb13000	49.92	chrII	14144967	cb25.fpc0305	368009	p1: CTTCAGATCTCAGAAGATCCAC p2: CGATGTGTCTTATCTCCCTTAC p4: GTTCAGTGACCTCCTCTTCCTG