Integrated Genetic/Genomic Map of C. briggsae - Chromosome chrI

C. briggsae > Integrated Map > Chromosome chrI

Chrom

chrI

Ultras

Genetic

Map

22977

fpc2695

0.65

*cb14340
*cb14278

644648

fpc0006

0.65

*cb6850

713123

fpc4101

2.69

*cb17260

941384

fpc0091b

3.91

*cb54
*cb3500

2727289

fpc4321

13.45

*cb16933

3241626

fpc3857b

14.03

*cb1410

4751309

fpc0071c

14.03

*cb12446

5035963

14.03

*cb22801

5774454

fpc2887d

23.40

*cb7330

5900439

NA_141

23.40

*cb13312

5963710

fpc0053

23.40

*cb1980
*cb2025

6148311

fpc4238

23.40

*cb14871

6414422

fpc2887b

23.40

*cb14906

6495655

fpc1417

23.40

*cb19158
*cb19142

6919467

fpc2374b

23.40

*cb20720
*cb20696

7663845

fpc2888a

22.78

*cb7159
*cb1373
  *cb1182
   *cb1050
    *cb3561

8927223

fpc4171

27.40

*cb7568

9139745

fpc2032

28.59

*cb19655

9569750

fpc3441

29.19

*cb18005

9824214

fpc4112

30.50

*cb16862

10007180

fpc4030b

38.92

*cb14997

10567778

fpc2090

51.29

*cb17827

10660558

fpc4140

51.29

*cb993

SNP Markers for Genetic Map of chrI
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb14340	0.65	chrI	22977	cb25.fpc2695	2954	p1: GAAAAACCAATTTTCTCTCTTTT p2: GAAGGTATTTGGGTGGATTC p3: CTCTCTTTTGAATGAGACAATTCCTTTTTTTAT
cb14278	0.6536	chrI	81189	cb25.fpc2695	61166	p1: AAAAATAACCCCGAATTCTC p2: CTTCTGAAGACGTGGATTCTT p3: CGATCACGCCAACGGCT
cb6850	0.65	chrI	644648	cb25.fpc0006	221306	p1: CAACTACTGAAGGCCAAAAA p2: CAGGTTGTAGTAGGTTTTGAGTG p3: CAGGATTTCCAGTTAAAATTCTTGAATTT
cb17260	2.69	chrI	713123	cb25.fpc4101	48696	p1: ATTTTTGATATTCATTGCCTTTT p2: TTCAAAGTTTTAGAGATTTCTGTG p3: GGCTGAAATCGCTGGAAAAACTG
cb54	3.91	chrI	941384	cb25.fpc0091b	290170	p1: GTACTGTACGAACGGGACTAAA p2: GTCATCTGGAGCGACTTCTA p3: CGAACGGGACTAAAAAAAAACCAACAA
cb3500	5.7109	chrI	1187486	cb25.fpc0091b	44068	p1: CTTCCCCATTTATTTGCTTTA p2: TTAACTTGATCGAACTGATTTTT p3: AGCCTATGCATACAGACAGGAATT
cb16933	13.45	chrI	2727289	cb25.fpc4321	1495636	p1: AACTGTGGTAAAAGTGAAACGTA p2: AAAAAGGCCAAATAGTTACAAAT p4: AGGCAGGGTTATAAAGGCACC
cb1410	14.03	chrI	3241626	cb25.fpc3857b	488224	p1: ACTCACAGTCTCATATTGGGATA p2: GCATCTAAATGATGGAAGCTAT p3: GGGATATCAACGCAACTTTACAAGT
cb12446	14.03	chrI	4751309	cb25.fpc0071c	1461382	p1: TCTAGCAATGGGTTTAACAGATA p2: ACAGATGCATAGTATCAATCATTC p4: GACGTCATCTTTGTTGTAGATACTGG
cb22801	14.03	chrI	5035963	Un	0
cb7330	23.40	chrI	5774454	cb25.fpc2887d	527766	p1: TCTTATCCTTTAACACCTTCTCA p2: AGGATTCTGTTCTGGGATATTAG p3: TTTCTTTTATCTTTTCGTTTTTCTCCTTATTTTACA
cb13312	23.40	chrI	5900439	cb25.NA_141	17475	p1: TTTGTTCAGACTCTTCTTCTTCT p2: AATTCGAGTCGTGTTATACTGAG p3: TTCTTCTTTCAAAGTTACAAAAAATCAGAATCAATA
cb1980	23.40	chrI	5963710	cb25.fpc0053	155258	p1: AAATCATCATAAAGAGAGATTGAGA p2: TTCATGTTCAATGTTGTTCTGT p4: AATATTTTTTGCCGATTGGGATCT
cb2025	23.4021	chrI	6098605	cb25.fpc0053	20363	p1: AGGTTTTTCGAATACCTCAAGT p2: AAGAATGCATACCCTAACTCC p3: TGGCAGTTTTGTATTCTGCAGGTA
cb14871	23.40	chrI	6148311	cb25.fpc4238	57927	p1: AAACATCAGAAGGTGACTAAAGA p2: ATCCCTCTTTGGAGTTATAAACA p4: CCACAAAATAGGGGTTGTTGGCT
cb14906	23.40	chrI	6414422	cb25.fpc2887b	60655	p1: ATCCGTTTCAAATCTATCTTCTT p2: GAGTAGACCGACACCTTAAAAA p4: CCGACACCTTAAAAAAGGCTTTATCTA
cb19158	23.40	chrI	6495655	cb25.fpc1417	20479	p1: GTGGTCAAGTCATAAATCAAAAA p2: GTGTTGATGTGAGAGTGTTTGTA p4: GTGATTCCAACCCCAATCGAATG
cb19142	23.4021	chrI	6698898	cb25.fpc1417	223722	p1: TATTTAAACGGAATTTTTGTCTG p2: AATTTAGTTTTTCCCTCATCTTT p3: GCCCTCTGCGACAATTATCAATATAA
cb20720	23.40	chrI	6919467	cb25.fpc2374b	69045	p1: CCCTAACCTAACTTATTGCTCAT p2: TATCACTCACCTCCTCCATTT p4: CGGGAACTACTTCGTGGTGAAG
cb20696	23.4021	chrI	7087906	cb25.fpc2374b	237484	p1: CTTTTACTTTTAACTGGCAATTC p2: GGGAGAGAAGATTACTGTAGGAG p3: CAAAATACCGTATACGATCCATGACTATC
cb7159	22.78	chrI	7663845	cb25.fpc2888a	523249	p1: AGGAATAAGAAATACCCACTGAC p2: AAGAAAAGAACGGAGATAAAATC p3: TCTTTAATTCTTTGTTGAAGCAAAGAAATATTCC
cb1373	15.8923	chrI	7680725	cb25.fpc2888a	540129	p1: AATGAGAGAGTAGCTTGGAAAAG p2: AACCTAGTTGCCTCTATTGACTT p3: TGGCTCCTGTGTGGAAAGTAG
cb1182	17.0552	chrI	8190997	cb25.fpc2888a	1050401	p1: CTTCAGACATTTCAATGATAAGAT p2: AGTCTGTGTGGTCGTGACAT p4: GGTAAGTCTTATTTTACTGAAAATTGCAAAAAAAAAA
cb1050	18.218	chrI	8573891	cb25.fpc2888a	1433295	p1: CTGATAGATTTCTCGTTTTCATC p2: CGGATATTGGATCTAGAAAGTTA p4: TGAATGGATAGGGGGAGGAAAGT
cb3561	18.8315	chrI	8844518	cb25.fpc2888a	1703922	p1: GGTAGCTGTGAAGCGTATAGTAG p2: GGATCCGTTAAATCATTCTACA p4: AATCATATTACATTATCCAATCTCTTTTATTGTTATAC
cb7568	27.40	chrI	8927223	cb25.fpc4171	151314	p1: ACCGTAACGAAACTAGTAACACA p2: ATGACTAATAGGCCAGGACATA p4: GTAAGGAATAAATTAGTTTTCTCAAAATCTGGATT
cb19655	28.59	chrI	9139745	cb25.fpc2032	61109	p1: GAAGAACTACAGGTGAGAATCTG p2: ACCTCCATTCTATCCAATACTTT p3: TTGGTTGATCGAATTACTGATGC
cb18005	29.19	chrI	9569750	cb25.fpc3441	79178	p1: ATTATTTCTTGACAAAACACTGAC p2: AAAAATAGGGAAATCTGACACA p3: CGTTTGGCTACACTGTTTTACACTCT
cb16862	30.50	chrI	9824214	cb25.fpc4112	106442	p1: TCTTATTGAGTAACCCCCATAAT p2: CAAATTACTTTGATCTCGATTGT p4: GTTTTCCTTGTTTGCTTTTTTATGTTGC
cb14997	38.92	chrI	10007180	cb25.fpc4030b	406843	p1: ATAAGATTTTCAGCCATTTGTTA p2: CACGACGTTTCTGGAATTAG p4: CGAAATTCGGGTCCCAATTAAGACTT
cb17827	51.29	chrI	10567778	cb25.fpc2090	153656	p1: CACAAATTCTGCTTCCTCTG p2: GTTTAGCTGAAGAACTCACCAT p4: CAGGCTTGACATCCTCGTCAA
cb993	51.29	chrI	10660558	cb25.fpc4140	614286	p1: AGAAGAAGGGGTAGAAGAGGT p2: TTTTCAAATGTCTAATTGGGTAA p3: GGTTCAGGAGGTACAGTAACATTTTTCA