Integrated Genetic/Genomic Map of C. briggsae - Chromosome

C. briggsae > Integrated Map > Chromosome

Chrom

chrI

Ultras

Genetic

Map

22977

fpc2695

0.65

*cb14340
*cb14278

644648

fpc0006

0.65

*cb6850

713123

fpc4101

2.69

*cb17260

941384

fpc0091b

3.91

*cb54
*cb3500

2727289

fpc4321

13.45

*cb16933

3241626

fpc3857b

14.03

*cb1410

4751309

fpc0071c

14.03

*cb12446

5035963

14.03

*cb22801

5774454

fpc2887d

23.40

*cb7330

5900439

NA_141

23.40

*cb13312

5963710

fpc0053

23.40

*cb1980
*cb2025

6148311

fpc4238

23.40

*cb14871

6414422

fpc2887b

23.40

*cb14906

6495655

fpc1417

23.40

*cb19158
*cb19142

6919467

fpc2374b

23.40

*cb20720
*cb20696

7663845

fpc2888a

22.78

*cb7159
*cb1373
  *cb1182
   *cb1050
    *cb3561

8927223

fpc4171

27.40

*cb7568

9139745

fpc2032

28.59

*cb19655

9569750

fpc3441

29.19

*cb18005

9824214

fpc4112

30.50

*cb16862

10007180

fpc4030b

38.92

*cb14997

10567778

fpc2090

51.29

*cb17827

10660558

fpc4140

51.29

*cb993

Chrom

chrII

Ultras

Genetic

Map

1339598

fpc4114

2.38

*cb5083

1402746

fpc4168

2.38

*cb18765

1651636

fpc4292

6.96

*cb4553
*cb4572

2165243

fpc0071a

8.19

*cb16788

2560572

fpc3052a

10.69

*cb21859
*cb13137

3131271

fpc0011

11.88

*cb13016
*cb6254

4536997

fpc0072

20.86

*cb3415

4816851

fpc2454a

21.46

*cb15106
*cb15087

5294043

NA_214

19.07

*cb4597

5399477

fpc2888c

23.32

*cb22927

5802004

fpc0058

23.32

*cb6851
*cb7109
  *cb19956
   *cb5445
    *cb5486
     *cb16183
      *cb16363
       *cb10650

10280825

fpc4206

29.95

*cb3574
*cb4337
  *cb4239
   *cb19820
    *cb22656
     *cb22661

11793937

fpc4071

37.32

*cb19271

11936952

fpc1402a

37.90

*cb4574

12410399

fpc2260

40.37

*cb15583

13188945

fpc4181

46.09

*cb16865

13354302

fpc4055

46.70

*cb14181

13389443

NA_155

46.70

*cb21771

14144967

fpc0305

49.92

*cb13000

Chrom

chrIII

Ultras

Genetic

Map

244956

fpc4030a

1.23

*cb2665

1175006

fpc0010a

6.07

*cb2958

1261565

fpc2587

6.07

*cb20769

1891383

fpc4153

12.46

*cb20758

2153870

fpc4341

14.30

*cb19183

2380437

fpc4069b

14.94

*cb10042
*cb10088

2699993

fpc2187

16.84

*cb22597
*cb22622

3249396

fpc0103

20.02

*cb17390
*cb17382

3441085

NA_195

20.02

*cb6119

3614380

fpc2976

21.24

*cb12087
*cb12098

4666599

fpc2234

23.02

*cb12108
*cb5220
  *cb21057
   *cb21075
    *cb10632
     *cb5362

6544265

fpc4044a

23.67

*cb8819
*cb8776

6667046

fpc2203

23.67

*cb1979

6837362

fpc4079

23.67

*cb22040

8859723

fpc0201

25.68

*cb5262
*cb5359

9290084

fpc4154

26.37

*cb17443

9653919

fpc2193

27.59

*cb22149
*cb22189

10067486

fpc0002

29.97

*cb22714

10585420

fpc2887c

31.25

*cb9186

11167733

fpc4224

35.36

*cb13529

12089461

fpc4010

35.36

*cb10275

12444380

NA_132

35.36

*cb19477

13084264

fpc4426b

38.77

*cb23143

13392235

fpc4013

39.90

*cb15337
*cb15330

13496198

NA_102

40.52

*cb12100

Chrom

chrIV

Ultras

Genetic

Map

1426951

fpc3752

2.56

*cb23125
*cb23135
*cb22832

2293218

fpc4250

7.88

*cb8821

2508273

fpc4118

9.19

*cb8147
*cb8176

2727996

fpc2501b

10.98

*cb17380

3089359

fpc4382a

12.26

*cb16748

3170931

fpc4382c

12.93

*cb2961

3343336

fpc3857c

12.93

*cb18435
*cb18346

4452895

fpc4260

17.62

*cb3790
*cb3750

4820534

fpc0143

18.21

*cb14731
*cb6423
*cb10874
*cb10995

6808664

fpc0110

32.34

*cb11584
*cb14228

8117943

fpc0063

32.34

*cb3606

8223491

fpc4152

32.34

*cb9283
*cb7745

9519049

fpc0039

18.21

*cb17206
*cb13592
*cb7750

11143862

fpc4069d

19.94

*cb3962

11261735

fpc0081

19.94

*cb16167
*cb16182

11574284

fpc2374a

31.05

*cb19643

11853697

fpc1570

31.05

*cb16852
*cb16809
*cb7791
*cb7823

12463505

fpc4090

20.58

*cb14873

12799467

fpc0065a

23.05

*cb15906

12944894

fpc4132

25.48

*cb18540

13114275

NA_087

41.46

*cb7589

13318965

fpc4217

42.07

*cb22825

13534368

fpc0107

43.50

*cb16054

13610561

fpc3835

50.07

*cb2090
*cb2293
*cb5108

14458153

fpc2328

54.94

*cb18281
*cb18329

14721541

fpc4347

56.68

*cb8552
*cb8535

15011731

fpc3052b

57.83

*cb23314
*cb23233

Chrom

chrV

Ultras

Genetic

Map

954249

fpc2454b

0.65

*cb8719
*cb8773

1141887

fpc0024

0.65

*cb13240

1392087

fpc0022a

1.87

*cb21107

1687668

fpc4095

1.87

*cb3578

1840393

fpc2114

2.50

*cb8459
*cb8380

2115162

fpc4202

3.16

*cb2439

2340160

fpc4263

5.09

*cb21790
*cb8284
*cb11784

2646567

NA_025

5.74

*cb16713

2797228

fpc4334b

6.36

*cb4604

2842019

fpc2310

6.94

*cb8300
*cb3365

3867747

fpc0023

8.26

*cb16783

4984655

fpc2887a

9.63

*cb17749
*cb17729

5526513

fpc2051

19.55

*cb431
*cb457

5844990

fpc4470

18.89

*cb392
*cb59

7621226

fpc2220

23.51

*cb2964
*cb3127
*cb13350
*cb3883

9526181

fpc4126

24.12

*cb9955
*cb9693
*cb22547

11847933

fpc2501a

26.67

*cb19272

13460684

fpc4063

40.15

*cb11419
*cb11355

13777067

fpc4382b

40.84

*cb11774

13985981

NA_073

42.80

*cb4798

14143800

fpc4426a

47.84

*cb2086

14730542

fpc4109

49.21

*cb12896
*cb15951

14999944

fpc2888b

56.92

*cb12967

15249004

fpc0129

56.92

*cb10494
*cb10621
*cb8129

15990402

NA_031

58.11

*cb19816

Chrom

chrX

Ultras

Genetic

Map

547956

fpc1402c

0.66

*cb12080

633195

fpc0071b

0.66

*cb2376

707053

fpc4033

0.66

*cb16537
*cb21766
  *cb21200
   *cb22278
    *cb18017
     *cb11789

4473579

fpc0045

8.41

*cb20692
*cb7993

4913208

fpc4069a

8.41

*cb16698
*cb17685

6249782

fpc4069c

9.05

*cb12375

6311841

fpc0083

9.69

*cb8973

7257350

fpc4066

10.30

*cb14730

7458611

fpc3857a

10.30

*cb11422
*cb2444
  *cb2629
   *cb19797
    *cb1971
     *cb1800
      *cb13128
       *cb10631

11499721

fpc0091a

11.64

*cb11728
*cb11740

11840306

fpc2397

11.64

*cb6849

13367313

fpc4044b

13.61

*cb16518
*cb14864

14787844

fpc0003

17.07

*cb1691
*cb9641
*cb9659

15220240

fpc4023

17.68

*cb9664
*cb8211
*cb8248
*cb6150

16351819

fpc4403

18.36

*cb5748
*cb6111

16795831

fpc0106

21.03

*cb19019
*cb18839

17362265

fpc0829

21.67

*cb18742
*cb7474
*cb15550
*cb21042

20379957

fpc2334

27.69

*cb3581

SNP Markers for Genetic Map of chrI
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb14340	0.65	chrI	22977	cb25.fpc2695	2954	p1: GAAAAACCAATTTTCTCTCTTTT p2: GAAGGTATTTGGGTGGATTC p3: CTCTCTTTTGAATGAGACAATTCCTTTTTTTAT
cb14278	0.6536	chrI	81189	cb25.fpc2695	61166	p1: AAAAATAACCCCGAATTCTC p2: CTTCTGAAGACGTGGATTCTT p3: CGATCACGCCAACGGCT
cb6850	0.65	chrI	644648	cb25.fpc0006	221306	p1: CAACTACTGAAGGCCAAAAA p2: CAGGTTGTAGTAGGTTTTGAGTG p3: CAGGATTTCCAGTTAAAATTCTTGAATTT
cb17260	2.69	chrI	713123	cb25.fpc4101	48696	p1: ATTTTTGATATTCATTGCCTTTT p2: TTCAAAGTTTTAGAGATTTCTGTG p3: GGCTGAAATCGCTGGAAAAACTG
cb54	3.91	chrI	941384	cb25.fpc0091b	290170	p1: GTACTGTACGAACGGGACTAAA p2: GTCATCTGGAGCGACTTCTA p3: CGAACGGGACTAAAAAAAAACCAACAA
cb3500	5.7109	chrI	1187486	cb25.fpc0091b	44068	p1: CTTCCCCATTTATTTGCTTTA p2: TTAACTTGATCGAACTGATTTTT p3: AGCCTATGCATACAGACAGGAATT
cb16933	13.45	chrI	2727289	cb25.fpc4321	1495636	p1: AACTGTGGTAAAAGTGAAACGTA p2: AAAAAGGCCAAATAGTTACAAAT p4: AGGCAGGGTTATAAAGGCACC
cb1410	14.03	chrI	3241626	cb25.fpc3857b	488224	p1: ACTCACAGTCTCATATTGGGATA p2: GCATCTAAATGATGGAAGCTAT p3: GGGATATCAACGCAACTTTACAAGT
cb12446	14.03	chrI	4751309	cb25.fpc0071c	1461382	p1: TCTAGCAATGGGTTTAACAGATA p2: ACAGATGCATAGTATCAATCATTC p4: GACGTCATCTTTGTTGTAGATACTGG
cb22801	14.03	chrI	5035963	Un	0
cb7330	23.40	chrI	5774454	cb25.fpc2887d	527766	p1: TCTTATCCTTTAACACCTTCTCA p2: AGGATTCTGTTCTGGGATATTAG p3: TTTCTTTTATCTTTTCGTTTTTCTCCTTATTTTACA
cb13312	23.40	chrI	5900439	cb25.NA_141	17475	p1: TTTGTTCAGACTCTTCTTCTTCT p2: AATTCGAGTCGTGTTATACTGAG p3: TTCTTCTTTCAAAGTTACAAAAAATCAGAATCAATA
cb1980	23.40	chrI	5963710	cb25.fpc0053	155258	p1: AAATCATCATAAAGAGAGATTGAGA p2: TTCATGTTCAATGTTGTTCTGT p4: AATATTTTTTGCCGATTGGGATCT
cb2025	23.4021	chrI	6098605	cb25.fpc0053	20363	p1: AGGTTTTTCGAATACCTCAAGT p2: AAGAATGCATACCCTAACTCC p3: TGGCAGTTTTGTATTCTGCAGGTA
cb14871	23.40	chrI	6148311	cb25.fpc4238	57927	p1: AAACATCAGAAGGTGACTAAAGA p2: ATCCCTCTTTGGAGTTATAAACA p4: CCACAAAATAGGGGTTGTTGGCT
cb14906	23.40	chrI	6414422	cb25.fpc2887b	60655	p1: ATCCGTTTCAAATCTATCTTCTT p2: GAGTAGACCGACACCTTAAAAA p4: CCGACACCTTAAAAAAGGCTTTATCTA
cb19158	23.40	chrI	6495655	cb25.fpc1417	20479	p1: GTGGTCAAGTCATAAATCAAAAA p2: GTGTTGATGTGAGAGTGTTTGTA p4: GTGATTCCAACCCCAATCGAATG
cb19142	23.4021	chrI	6698898	cb25.fpc1417	223722	p1: TATTTAAACGGAATTTTTGTCTG p2: AATTTAGTTTTTCCCTCATCTTT p3: GCCCTCTGCGACAATTATCAATATAA
cb20720	23.40	chrI	6919467	cb25.fpc2374b	69045	p1: CCCTAACCTAACTTATTGCTCAT p2: TATCACTCACCTCCTCCATTT p4: CGGGAACTACTTCGTGGTGAAG
cb20696	23.4021	chrI	7087906	cb25.fpc2374b	237484	p1: CTTTTACTTTTAACTGGCAATTC p2: GGGAGAGAAGATTACTGTAGGAG p3: CAAAATACCGTATACGATCCATGACTATC
cb7159	22.78	chrI	7663845	cb25.fpc2888a	523249	p1: AGGAATAAGAAATACCCACTGAC p2: AAGAAAAGAACGGAGATAAAATC p3: TCTTTAATTCTTTGTTGAAGCAAAGAAATATTCC
cb1373	15.8923	chrI	7680725	cb25.fpc2888a	540129	p1: AATGAGAGAGTAGCTTGGAAAAG p2: AACCTAGTTGCCTCTATTGACTT p3: TGGCTCCTGTGTGGAAAGTAG
cb1182	17.0552	chrI	8190997	cb25.fpc2888a	1050401	p1: CTTCAGACATTTCAATGATAAGAT p2: AGTCTGTGTGGTCGTGACAT p4: GGTAAGTCTTATTTTACTGAAAATTGCAAAAAAAAAA
cb1050	18.218	chrI	8573891	cb25.fpc2888a	1433295	p1: CTGATAGATTTCTCGTTTTCATC p2: CGGATATTGGATCTAGAAAGTTA p4: TGAATGGATAGGGGGAGGAAAGT
cb3561	18.8315	chrI	8844518	cb25.fpc2888a	1703922	p1: GGTAGCTGTGAAGCGTATAGTAG p2: GGATCCGTTAAATCATTCTACA p4: AATCATATTACATTATCCAATCTCTTTTATTGTTATAC
cb7568	27.40	chrI	8927223	cb25.fpc4171	151314	p1: ACCGTAACGAAACTAGTAACACA p2: ATGACTAATAGGCCAGGACATA p4: GTAAGGAATAAATTAGTTTTCTCAAAATCTGGATT
cb19655	28.59	chrI	9139745	cb25.fpc2032	61109	p1: GAAGAACTACAGGTGAGAATCTG p2: ACCTCCATTCTATCCAATACTTT p3: TTGGTTGATCGAATTACTGATGC
cb18005	29.19	chrI	9569750	cb25.fpc3441	79178	p1: ATTATTTCTTGACAAAACACTGAC p2: AAAAATAGGGAAATCTGACACA p3: CGTTTGGCTACACTGTTTTACACTCT
cb16862	30.50	chrI	9824214	cb25.fpc4112	106442	p1: TCTTATTGAGTAACCCCCATAAT p2: CAAATTACTTTGATCTCGATTGT p4: GTTTTCCTTGTTTGCTTTTTTATGTTGC
cb14997	38.92	chrI	10007180	cb25.fpc4030b	406843	p1: ATAAGATTTTCAGCCATTTGTTA p2: CACGACGTTTCTGGAATTAG p4: CGAAATTCGGGTCCCAATTAAGACTT
cb17827	51.29	chrI	10567778	cb25.fpc2090	153656	p1: CACAAATTCTGCTTCCTCTG p2: GTTTAGCTGAAGAACTCACCAT p4: CAGGCTTGACATCCTCGTCAA
cb993	51.29	chrI	10660558	cb25.fpc4140	614286	p1: AGAAGAAGGGGTAGAAGAGGT p2: TTTTCAAATGTCTAATTGGGTAA p3: GGTTCAGGAGGTACAGTAACATTTTTCA

SNP Markers for Genetic Map of chrII
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb5083	2.38	chrII	1339598	cb25.fpc4114	101672	p1: ATATTCTCGATGAGCTGTGGT p2: GGGGAAGTAGTAATACAAGTCCT p4: CCAACAGGGACTCCTGGTTTAG
cb18765	2.38	chrII	1402746	cb25.fpc4168	25432	p1: GGATTACTGTACATATCTTAGCTTCA p2: GTTGAAATTTTTGGCATCATA p3: ACTGTAATCTTGCTTTCTGCAGC
cb4553	6.96	chrII	1651636	cb25.fpc4292	367053	p1: AATCAGATCTAAAGTGTGATCGT p2: AAAAAGCAGGTAGTTATGGGATA p4: TCTTGCACAGGAATTGCGATAATTAG
cb4572	7.5733	chrII	1728099	cb25.fpc4292	290590	p1: GAAGAGCTACAAAAATCTCAAAA p2: TTTTAGCTCCTCGTTTTCTTT p3: CGAAAAACTGTGAAAACTGTGAAAAGTAA
cb16788	8.19	chrII	2165243	cb25.fpc0071a	146455	p1: TACAGGAATATTCTGGTTCTGTT p2: GGGTTTCTCTTTATGAACTACAA p3: ACATCCAGTTCGATTTCCGGT
cb21859	10.69	chrII	2560572	cb25.fpc3052a	557382	p1: GGGAAGCATTCTTCAGTGTAT p2: TGTATATATGGTAGATACGTGGAAC p3: TGAAGACAGTTTTCCTAGTCTTCTAGTG
cb13137	11.2721	chrII	2750345	cb25.fpc3052a	367609	p1: CGGTAACTTCTGAAAAAGGAT p2: ATGATTATTGGTACGATCACATT p4: AGAATGCATATTTTGAGAACTGCAAAAAAT
cb13016	11.88	chrII	3131271	cb25.fpc0011	1070952	p1: GCTTTTCCATCTATGCTCAAT p2: ATTCTAACCTTCCTCTAGTGTCC p3: AGAATTCGCATTTTTCAGGAAGAAGAA
cb6254	13.0977	chrII	3565562	cb25.fpc0011	636661	p1: TGGAATGAATTCTGTGTATTTTT p2: AAAGCTAACGAAACTCTTGAAAC p4: GCTATATGTCCTGCACATCTAACTTTG
cb3415	20.86	chrII	4536997	cb25.fpc0072	334675	p1: GTATTTTTGATCGATTTTTCTGA p2: AGTTTTCAGTTCATTCGCTATC p3: CCCTGTACATAGACTGGCTTGT
cb15106	21.46	chrII	4816851	cb25.fpc2454a	57337	p1: TTACATTTGAGAAAAAGACACCT p2: TCACCTCCAAGCTAACATTATAC p4: TTGTAATGATTCGACTCGTGCTTTG
cb15087	22.7105	chrII	5050450	cb25.fpc2454a	290936	p1: TGTTGATATTGGACATATTTTGA p2: CTAGATTTGTCTCTGTTCCATTC p3: GCGTAATGTAATGGGGTGTGAAGA
cb4597	19.07	chrII	5294043	cb25.NA_214	6584	p1: CCTCCCTTCTTATTTTTACTGTC p2: CGAGATGTTTTCAGATCATTTTA p4: GGAACATTTTCAGTTTGTCGAACAGTT
cb22927	23.32	chrII	5399477	cb25.fpc2888c	92662	p1: AAGTTATCACATTTGCATTTCTC p2: GATTCCGGTATCTCAATAAAAAT p4: ACATTTTGCTCTTCTCGAGAGAAAAGA
cb6851	23.32	chrII	5802004	cb25.fpc0058	4161592	p1: ATTTTGAACTGTTAGCTTCACAT p2: TATATCTCACTGCAATTTTCACC p4: TGCAAAGAGCCCATATAACCTACC
cb7109	24.4931	chrII	6589397	cb25.fpc0058	3374199	p1: AACAACAGAGGATACTCACTTTC p2: AGGCACGTAGATAATGAAAAAT p3: CCCAAAAGAAGAGGCCGGA
cb19956	25.0849	chrII	6946429	cb25.fpc0058	3017167	p1: CTTTATACCGATTTCAGCATTTA p2: CAAACCATGGAAATTCTCTAAC p3: CCAATGAGAAACAACTTCCTCTCTCATT
cb5445	25.6697	chrII	7513542	cb25.fpc0058	2450054	p1: TCATTTCTCTCTCTGATTTTCTC p2: TTTCCTTATATCTGGTTTCTTGA p4: GAGAAAAGAGAAAGAAACCAAGAGATAA
cb5486	26.2477	chrII	7753240	cb25.fpc0058	2210356	p1: GATCGATCAGTAGGAGTAGAACA p2: GTGAAGGACAGCAGAAACTAATA p3: GATCAGTAGGAGTAGAACATCAAGTGATT
cb16183	26.8127	chrII	7983690	cb25.fpc0058	1979906	p1: GAGAACGTTCAAGGTTAGTTTTT p2: TATGTAGCCTCGATTCAACTAGA p4: GACACTAAAAATTCTTTTCTTGAAATACTCACTT
cb16363	27.9755	chrII	9114860	cb25.fpc0058	848736	p1: AAATACAGTACCTCCATTTTTGA p2: CACAGATATTTTTCGATTGATCT p4: TGTTGCTTGAAATTTTCATTCGGTCTAT
cb10650	28.6207	chrII	9363532	cb25.fpc0058	600064	p1: CTAAACTCTCGAACTGTTACCTG p2: CGTATTGTCGGAAATATACACTC p3: TCTGGATGGTATCGTTTGACATGAA
cb3574	29.95	chrII	10280825	cb25.fpc4206	317130	p1: ATCTCTACTGCTCACGTATTGAC p2: AACAACAGCTTTTACGATGTTAC p4: TGAATCACACCAACGACTTCTTCT
cb4337	30.5389	chrII	10501886	cb25.fpc4206	538191	p1: TGACTTTTCCTGTTTGATGAG p2: ATTTTCTTATCAGCAAAAATCTG p3: CCAAAGCTTCCCATGTCTCCA
cb4239	32.3573	chrII	10822777	cb25.fpc4206	859082	p1: AAAACCTAAACTGTCATCTTTGA p2: CTGAATTCTGATTGTGAGACAG p4: GGGCCTCCCACTATTCAGTTT
cb19820	34.7849	chrII	11536467	cb25.fpc4206	1572772	p1: AAGTTGTGGATTTTGTACATAGC p2: CTGACTCAGAAAATTTATCACCT p4: CGTTTTTATAAAGATTTGACTTCCGAAATACCT
cb22656	32.9287	chrII	11562956	cb25.fpc4206	1599261	p1: ACTACAAAATGAAATGGTCTCC p2: GAGAGCATGAAAACTGCATAAT p4: GCAAACAGGACATTCCCATCATT
cb22661	33.5348	chrII	11593784	cb25.fpc4206	1630089	p1: AAAAATTAAAAATTCCAGATCGT p2: TTCAGGATAATAGTGTTGGATGT p3: GCTCTTTGCTCAATGATTCAGAAGACT
cb19271	37.32	chrII	11793937	cb25.fpc4071	79427	p1: TCACTATTCTCACTGATCGTAATC p2: ATCATCCATTTTGTTTGAATAAC p3: TGCTTGTGAGTGATAACTAAATAGGTGT
cb4574	37.90	chrII	11936952	cb25.fpc1402a	76410	p1: TTTGAAGTTTTTCGTAAAAAGAG p2: AGGGAAAATGGGAAATACTG p4: GAAAATGGGAAATACTGTATTCCACTGT
cb15583	40.37	chrII	12410399	cb25.fpc2260	675755	p1: CCTGAAAGCTTGTATACCGTAA p2: AAAAATGCCTTCACTTCTGAC p4: GGATTAGCTTGTAGATAACGTCTTTGAAAT
cb16865	46.09	chrII	13188945	cb25.fpc4181	22768	p1: AAAATACAAGAAACAGCTTGAGA p2: GGAAGAATGTATTATTGGTCAAC p3: GCTTGAGAAAAGAGGATTTCGATGTAA
cb14181	46.70	chrII	13354302	cb25.fpc4055	19339	p1: GAGATACTGTGACTTGTTGATGA p2: TTTAGATGATTTTTGACCCTTTT p4: CCCTTTTTTGGGCCGCTTTTG
cb21771	46.70	chrII	13389443	cb25.NA_155	15703	p1: CCAAGAAGGTAATGAGGAAAT p2: TTTTACATGATTTTCAGTCATTTT p3: GGTAATGAGGAAATGGTGGAGCT
cb13000	49.92	chrII	14144967	cb25.fpc0305	368009	p1: CTTCAGATCTCAGAAGATCCAC p2: CGATGTGTCTTATCTCCCTTAC p4: GTTCAGTGACCTCCTCTTCCTG

SNP Markers for Genetic Map of chrIII
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb2665	1.23	chrIII	244956	cb25.fpc4030a	196565	p1: TAAAGTAACTTCATCGGAATCTC p2: ATCAGGGTATACGGTAGCTCTAA p4: GCCTTGACTAGACTTGAATTTGGTT
cb2958	6.07	chrIII	1175006	cb25.fpc0010a	160938	p1: ATACTGTAACCGATGGAATTGT p2: AAACTTACCTATCCGAGTCTACG p4: CCAAACGATGAGCAATGGAAATTGT
cb20769	6.07	chrIII	1261565	cb25.fpc2587	604118	p1: CATTGCTCATCGTTAGTTCTAGT p2: TCGAAACTGATGTATTCCATATT p4: AAACTTTTTCTTCTTCTTCTTATCACAATTC
cb20758	12.46	chrIII	1891383	cb25.fpc4153	25601	p1: AGAGAAACGAATGGCTATGAG p2: ACAGACGACTTCCTTTGTTTT p3: GCTCCACTGGACAGAGGAC
cb19183	14.30	chrIII	2153870	cb25.fpc4341	41538	p1: TACTTCCCCATTAAACTTCATAA p2: ACTAAAAACATTGATCACCTTGA p3: GCTGCATGGGCGAATTT
cb10042	14.94	chrIII	2380437	cb25.fpc4069b	132026	p1: CAGAAAGAAATGACGAGTTAGAG p2: CGATCTTTGTCTGTTCTCAAATA p4: GTTTCTCATACTCAAATTACTCCAGATTT
cb10088	16.2594	chrIII	2495339	cb25.fpc4069b	17124	p1: TTATGGGTTATGCACAGTAGTTT p2: TAGAAACCTGATCCCTGTTTT p3: AGTGACGTGGCATGAGAAAAAATC
cb22597	16.84	chrIII	2699993	cb25.fpc2187	507130	p1: CTGTCTCTGCTGACTTTGTAATC p2: TGTAATCCAAGAACCTTTAAACA p4: GGGTTAGGCTCATCACAACACAAT
cb22622	17.4509	chrIII	2824554	cb25.fpc2187	382569	p1: TGTAGGTACTAGCAAACGATTTT p2: AGAGACACAGAAACCGAGTG p3: CCCGTTTCTCTTTTTTGTCCCTT
cb17390	20.02	chrIII	3249396	cb25.fpc0103	42174	p1: CAGTCTTTTCAATGAATTTATCC p2: GCAGTTGAGAGAGAATGAGAAG p3: TGTTTGGATGGGATACCATCTGAAAA
cb17382	20.0156	chrIII	3335715	cb25.fpc0103	128493	p1: ACTTGATCTTCTAGCTGGTTTCT p2: CACAAAGTTTCAAAATCTCTGAC p4: GCAAAATATGGATTTTCAGCCACG
cb6119	20.02	chrIII	3441085	cb25.NA_195	56109	p1: TGATAAAACAGGCGGATAAC p2: TCGCTTTCTCATTTTACTGTACT p3: CCGGGCCGAAAAGAGAAGAAA
cb12087	21.24	chrIII	3614380	cb25.fpc2976	117087	p1: CGGATGAGTATATTTGACATTTT p2: TAAACACTGTGGTTTTTGGTATT p4: CGTCCGTTTTCCAATTTCCGTTC
cb12098	21.2352	chrIII	3765584	cb25.fpc2976	268291	p1: GCTAACAATGAACCATTCAAC p2: AGCATGATACATATCAGTCAACA p4: CCTGTGGATTATGCTGATCAACATT
cb12108	23.02	chrIII	4666599	cb25.fpc2234	492935	p1: CTTCAAGACAACTTTTGACCTTA p2: CCATGATGTTTGGAACTTTT p4: AGTCGGGATTAAACTGGTGTATATTT
cb5220	22.4117	chrIII	4737256	cb25.fpc2234	563592	p1: AAAGCTATCTAGAAGGCTCTGTT p2: AGTAATCATCATAACTGGGGTCT p3: TCTCGAATCGACCCGGAGA
cb21057	22.4117	chrIII	5094315	cb25.fpc2234	920651	p1: GTCTCTTCATTTCATACGCTCT p2: AAAAACTGCTGAAGAATAACAAG p4: CCGGCATAAAACTAGCACAAAGCTT
cb21075	22.4117	chrIII	5138086	cb25.fpc2234	964422	p1: AGTCAGGGGAAAAACTTATTG p2: CAATTTTCTTCCCACTATCATAA p4: CATAATAATATACACAAAACAAAATTCGAATGC
cb10632	22.4117	chrIII	5509667	cb25.fpc2234	1336003	p1: CTGTCTGGACTTACAAAATTGA p2: TGTTCTTCACCAGAAGGAATAC p3: TTGAATTTAGAATTCCTTCTGATTTTCCAGA
cb5362	22.4117	chrIII	5559142	cb25.fpc2234	1385478	p1: CTATCCTTCATCTCGAATAAAAA p2: TACAACCTTTTCAAGCACCT p3: AGTGAGAACAAGCGGTGACG
cb8819	23.67	chrIII	6544265	cb25.fpc4044a	756652	p1: AATTTCATATTATCCCCCTTTT p2: GTATCTCTTTTCCCTCTTCACTC p3: CTGTCTTCCTTCCTCCCCAC
cb8776	23.6714	chrIII	6614173	cb25.fpc4044a	826560	p1: TAGAATAAGTGGACTGGATTGAG p2: CCCATTTTTCTGTGCTATCTAA p3: GGAACACGAGGCTGTGTGC
cb1979	23.67	chrIII	6667046	cb25.fpc2203	123890	p1: CACCAATAAAGTTTAGTACGTGTT p2: AACAAATTGACATCTCACTCAAG p4: GTCTTTTTTAGAGTATGCTCCAAACACA
cb22040	23.67	chrIII	6837362	cb25.fpc4079	46327	p1: TCTCATTTGACGGTGAACTT p2: CAAGAATCCATTTCTATCTGAAG p3: GACCTGAAAATATAAGGTGTCTAATGGAAC
cb5262	25.68	chrIII	8859723	cb25.fpc0201	305870	p1: GTTAATCCAGCTGACTGATTTC p2: GTTGATAGAGCACCTTGAAAATA p4: TTCGATAGGAAGGCGAGAGCTC
cb5359	25.685	chrIII	9111582	cb25.fpc0201	557729	p1: ATACTGCGTCTTGTTTTCTCTC p2: TGGCTGATTTAGAAACTAGGAG p3: CAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTA
cb17443	26.37	chrIII	9290084	cb25.fpc4154	317205	p1: ATCACGATAAGCGACAATTT p2: GATGCTTGAAAAATGAAAAACTA p3: ACGATAAGCGACAATTTTTGGAAAGA
cb22149	27.59	chrIII	9653919	cb25.fpc2193	46531	p1: AAAAGTGTACTAGCCAATGGTC p2: CTCAGATTGACTCCAAAACTTC p4: CCAAAACTTCCCTGGAAACTTTCTT
cb22189	28.1723	chrIII	9780191	cb25.fpc2193	172803	p1: GATTCTTTGATTATTCAGCTCAT p2: CCAATGGACAAGTTAGAAGTAAA p3: TGATTATTCAGCTCATAAAATGAAATTGTTCG
cb22714	29.97	chrIII	10067486	cb25.fpc0002	87901	p1: AAATCTCAAAATTGGCTTGTC p2: AAGAATATCCCATTTTTCTTGTC p3: TTTTCGAAAATCCTTGAAAAAATGTTCAAGA
cb9186	31.25	chrIII	10585420	cb25.fpc2887c	302303	p1: TAGAAATCGAGCTGGATGAG p2: TAAGAGCTACAGTAACCCAAAAC p4: CCCAAAACGCCTCAAATTTCCA
cb13529	35.36	chrIII	11167733	cb25.fpc4224	402325	p1: AATTGAAATTTGGGATTTTGA p2: GAATGCTCCAGAAGAAGATG p3: GCGATACTCTACAAACATCGATTTCTTCA
cb10275	35.36	chrIII	12089461	cb25.fpc4010	343708	p1: CAAGTCGTTCCTACTATGATGAG p2: TCTCGCAATAGAAACATAGTGAT p3: TTCTAGATTTTTCTGTGAAGAAATGAAGGAAT
cb19477	35.36	chrIII	12444380	cb25.NA_132	11112	p1: GATGAGCTCTTGTTGCATTT p2: GCAAGACGATCTACCATGAG p4: CAAAAAGAAGCGAAAAAACCCCC
cb23143	38.77	chrIII	13084264	cb25.fpc4426b	135526	p1: CCCATTATTCTTGATCTCTTATG p2: AAATGAAAGAAAGGAAGGAGTAG p4: TTTTCCCACGAGGTCCTTCTAATT
cb15337	39.90	chrIII	13392235	cb25.fpc4013	172346	p1: ATCCACGTAGTGATGAGACTG p2: TACAACCAATGGGAGTACTGTAG p3: GAGAATAAAGCAGTTTTAGATTTGAAATACATTTAAGA
cb15330	39.3371	chrIII	13439999	cb25.fpc4013	220110	p1: CTACCAGAGCATCCTCGTATT p2: TTTGGGGTGTTTTACACATATT p3: GGGCAGCCGAACAAAAACTTT
cb12100	40.52	chrIII	13496198	cb25.NA_102	9372	p1: TTATAATTTTTCCAGTTCCCAGT p2: ACATTTTTACAGTAGGCACTTTC p4: TCCATGAGTTCTCAGATTTCTCTACG

SNP Markers for Genetic Map of chrIV
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb23125	2.56	chrIV	1426951	cb25.fpc3752	914522	p1: TCTGATAATTTTGAAACATCAGTTA p2: TCACATATCATAAAAACCTAAGTCA p4: AAAAAATAGGTCACAGTGATTTATTTCGAAAAATA
cb23135	1.9357	chrIV	1549138	cb25.fpc3752	1036709	p1: AAAAATTGCATACAGACCTACAA p2: CAGAAACTATTTTTCTGGTAAGTG p3: AAAATTCACAAATTAATCGAGATTTCGAAACATA
cb22832	5.0969	chrIV	1674668	cb25.fpc3752	1162239	p1: AGAATATGCCAATTTCTTCTCA p2: CTAATTCTTGCTGTTTCAACACT p3: AGTTTCTGGAGGAACTTGGAGAAG
cb8821	7.88	chrIV	2293218	cb25.fpc4250	483031	p1: AATTTGGATGAACTGAAGTATTG p2: CCTTTTTGAAATAGTGTTTTCTG p3: GTATTGTGATATCTGAATCTTTTATCCACGA
cb8147	9.19	chrIV	2508273	cb25.fpc4118	107159	p1: ATTAAATAGCTGCGATAACAGAA p2: TCTTTCTTTTAGGTCGTCACTC p3: GCGATAACAGAAGAAGAACAGTTTTCT
cb8176	9.776	chrIV	2604834	cb25.fpc4118	203720	p1: TAGGAGTTGGGACCATACCT p2: CATGATCTCAGAGGTAGATTTTT p4: CTCAGAGGTAGATTTTTTCAAACTCATAGAAT
cb17380	10.98	chrIV	2727996	cb25.fpc2501b	28025	p1: GTCCAACAAGATGTATCGAAAT p2: GAAACTGAGCTAACTTCTTTGAA p3: CTGTGAGAGTGCCAGCTCC
cb16748	12.26	chrIV	3089359	cb25.fpc4382a	54942	p1: ATAACTGTCTGAGCTTGGTTGT p2: TAGAAATTGATTCCTGGAAACTT p4: GGAAACTTCAAATGCACTAATAATGC
cb2961	12.93	chrIV	3170931	cb25.fpc4382c	26531	p1: GCTTTTCGTAATTTTTCTCAAC p2: CAGCAAATCTTGAATTTCTTTAT p3: ACACCGTTTTTCAGCGAATTT
cb18435	12.93	chrIV	3343336	cb25.fpc3857c	148248	p1: CTCAACGTCATCGAGAGAGT p2: ACAATGTCCATCAACACCAT p4: ATGAGCAATCTGTAGAAGCGGT
cb18346	13.5631	chrIV	3669148	cb25.fpc3857c	474060	p1: AAATTCAGCAACTCAAAAATGT p2: ATTTTCAAAACCGAGGAAAT p3: CAGGAAAAACATATTTCTCAAAGCATGAG
cb3790	17.62	chrIV	4452895	cb25.fpc4260	216198	p1: AAGGTGTGGAGTATAGAGGCTAC p2: TTTTGACATGTCTATCCATTTTT p3: AACGGAAATTACGGTTTCAAGAAGTTTA
cb3750	17.6194	chrIV	4491842	cb25.fpc4260	177251	p1: CTCAGACAACATCTGAAAACTGT p2: TAAGTCAGGTTTGCCTTATTTTA p4: CTAGATTTTCTGGTTTACGGTCATTT
cb14731	18.21	chrIV	4820534	cb25.fpc0143	1908937	p1: TGTGGATATATAGAAAAAGGGAATA p2: AGAGTGAAGAAAAGGAGAAGAAG p4: AGCTCTTTCTCTTCCTCTTATTTTCAAAATT
cb6423	18.2111	chrIV	6139120	cb25.fpc0143	590351	p1: GTTAGAAGAGAAGAGGGTGCTAA p2: ACTCGAGTTTTTGTGCATATTT p4: GGAGGACGTCGCCCGT
cb10874	18.2111	chrIV	6212806	cb25.fpc0143	516665	p1: GTTGGGTGGCCTTTTATTAG p2: ACAATCTTATCAGTTTTTGGAGA p4: TTTTTTTCTTGCTGATTACGCTGAAAAAT
cb10995	18.2111	chrIV	6660972	cb25.fpc0143	68499	p1: CACGAGAGATGTAAGCATTAAAC p2: AGAGATTTAGCTGAACTTCTAATCA p4: CAAGCAAACACGCGGAATGAAA
cb11584	32.34	chrIV	6808664	cb25.fpc0110	79094	p1: CGTAGAAATCTGTTAAAGGAGGT p2: AGAACTAGCGTACTTTGTCGTTA p4: CCGACTGACAAGCTGGCG
cb14228	32.3448	chrIV	7059732	cb25.fpc0110	330162	p1: GCTTGTTGATGATTTACTCTAGG p2: GCCATAGGATTGTTCTTCTATCT p3: AAATTAAATTAATCCTATTTGAGATCGAAATAATTCAGAA
cb3606	32.34	chrIV	8117943	cb25.fpc0063	756021	p1: TTGCTTCAAATCTAATTCTTCTG p2: CACTTTCCTTATCAACTCACCTA p3: TGATCACATTGATATACCGTAATCATAGTCAT
cb9283	32.34	chrIV	8223491	cb25.fpc4152	94070	p1: TTCACCAAACTACATAAAAATCAA p2: CCGTTTCAAATAGTTCTCAAATA p3: ACCAAACTACATAAAAATCAAACTGCTGAA
cb7745	32.3448	chrIV	8998770	cb25.fpc4152	869349	p1: ACTTACATGACAAAACGAAAGAA p2: AAATGGCTTCTCCTAAAACCT p4: CTTCTCCTAAAACCTTCTCACGACA
cb17206	18.21	chrIV	9519049	cb25.fpc0039	1122418	p1: ACCACTAACAATAAGTCCCTTTT p2: ACCTTCTCCTAGAATCCTACAAA p3: GGATTCCCAATTTCCGGTGTTCTT
cb13592	18.2111	chrIV	10498307	cb25.fpc0039	143160	p1: CGTCTCATTAATCGTATCAATTT p2: CAGGATACAAATGGAAATACAGT p3: GCCAACGGATAGGCAGTAGAA
cb7750	18.7891	chrIV	10637058	cb25.fpc0039	4409	p1: TTCTTCTGGTTGCTGCTACT p2: CAAGAGGAAGATGGTAGGTG p4: CCGAAATCGAGCCGAGCC
cb3962	19.94	chrIV	11143862	cb25.fpc4069d	28140	p1: CAAGTACCACTATTTCGTCTTTG p2: TAAGCAATCAGAAATCCAGTATC p3: ACACTTCGACCCCAACTGG
cb16167	19.94	chrIV	11261735	cb25.fpc0081	89634	p1: GGTCATCTCCTGTATCATCTTT p2: ACTCCTGCTAGTGTCACATAAAA p3: ATGACATCAAGTTAACACAATTACTTTCTCT
cb16182	19.9386	chrIV	11486710	cb25.fpc0081	314609	p1: TCTTTTATTTCTTGTCGTCAGAT p2: CTTCTTCCACTCATGAGCAC p4: GCGGAAAACTCTGAAATGTGTGA
cb19643	31.05	chrIV	11574284	cb25.fpc2374a	73759	p1: TGATCTTCTCACTTTGATGCTAT p2: CTAAACCTCATCTTTTCCATTTC p3: CATACTTTGCCATGGCGGC
cb16852	31.05	chrIV	11853697	cb25.fpc1570	39625	p1: AATCGACATATGTATCCGTAAAT p2: GAAAGCAGATTAGCAGATAAGG p4: GCAGATAAGGGTGATTACGGTTGG
cb16809	31.046	chrIV	11948885	cb25.fpc1570	134813	p1: CTTGCAGTCCATTATTTGAAG p2: CAAGAAACTCATTCATCAAAATC p3: CACAACGTTACCATCGGCTCT
cb7791	31.046	chrIV	12137589	cb25.fpc1570	323517	p1: GGTAAAATTTCAAAAATCCAAAC p2: GCAAAAGGATATCAAAACAAAA p3: AAGCGGCTTAGTAGTTTCTAAAAGTTG
cb7823	31.046	chrIV	12174707	cb25.fpc1570	360635	p1: CTGATAACTTGGAAGAGGAGAA p2: TTGGTGGACTCAAAGTAGAAAT p3: CCAGGTCCCAGTCGCTCA
cb14873	20.58	chrIV	12463505	cb25.fpc4090	43051	p1: GGGATATGCATCATTATACTCTCT p2: CAAGAGATTTTTCGGAGTTTT p4: TTCGGAGTTTTTTAGAGTTGCAGTATG
cb15906	23.05	chrIV	12799467	cb25.fpc0065a	66011	p1: CCAAATTTGAGACTTCTAGACC p2: AACGAATAGAATGCATATGTCC p3: AAAATCAGATTTTCAGCCAAAATCC
cb18540	25.48	chrIV	12944894	cb25.fpc4132	79317	p1: GGATATCTGCCTTTTTGTTAAT p2: CGAAATTTTAGCATAAACTTGAA p3: TCTGCCTTTTTGTTAATTTTTGCATTCTT
cb7589	41.46	chrIV	13114275	cb25.NA_087	9666	p1: GAGAACAATTGGGGGACTAC p2: TCTTAGTGTACAAACTCTCCAGAA p3: ATTGGTGGAGAGGACAATTCAAGTA
cb22825	42.07	chrIV	13318965	cb25.fpc4217	134218	p1: CCGCAATACTACTCCATTCTTA p2: TTTTTGGCTCTCAAAACAAT p3: CCCATTTATACATAATTTTTTGATCATTTCCCT
cb16054	43.50	chrIV	13534368	cb25.fpc0107	81086	p1: CTAGCACTGTCAAAACATCAAA p2: AGAAGTGTAATGGATTCAATGAT p4: CATTCCAACCGGCTTGCC
cb2090	50.07	chrIV	13610561	cb25.fpc3835	788095	p1: AGGAGAGAGACTTTTGGATTTT p2: TGTCTTTTCTGCTGTTCTCTTAG p4: CGAAGATCCCAGTGGTCAATTGAG
cb2293	52.4512	chrIV	13848486	cb25.fpc3835	550170	p1: CCCTAAATAGCTCTAAACTTGTCT p2: TGAGGAAATTCAGCATTTTAAG p3: GAGTTTTGCTTCAAAATTTGACTTCGAG
cb5108	53.7013	chrIV	14181916	cb25.fpc3835	216740	p1: CTAATGTACCGGAAATTAAGTCA p2: ACCATTTCAAAAATCGATAAATA p3: CTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGA
cb18281	54.94	chrIV	14458153	cb25.fpc2328	169736	p1: TCCCTATCCATACCAACTTCTA p2: CCATCCAAAAATTCAAACTC p4: GGATTTGTCGGCATTGATAAGAGTGA
cb18329	55.5074	chrIV	14490088	cb25.fpc2328	137801	p1: TTTAAGCTGACTTTACCGAGTAT p2: GACACTTTCAATTGTCTGTTGTT p4: TCGGGAAGTTTTTTTTTCCTCTAAAGTT
cb8552	56.68	chrIV	14721541	cb25.fpc4347	93553	p1: ATTTCCTCCAATAATCTTCAAAT p2: ACTGCTCTCTTCCTTCAGAATA p3: TCAAGCTTCTGAATTCTGACGTCT
cb8535	56.0991	chrIV	14751224	cb25.fpc4347	123236	p1: CTTGGTTACGGTAGCAAAAA p2: TGGACTTCAATTAGAGAAAATGA p3: AAGCACAGTTTAACATTCAAGTTAGGTT
cb23314	57.83	chrIV	15011731	cb25.fpc3052b	96868	p1: CACATGTCCTTGTTTCTCTTTAC p2: CGACAGGAGTATCTCTTCAAAA p4: TCAGCGAAATGATGTTCCTTCGA
cb23233	57.8334	chrIV	15279696	cb25.fpc3052b	364833	p1: TGATCTTTCAATTGGGGATA p2: CTTCACACATCTCACAAGTCAT p4: CGCGACTGCAAAAGCATTCG

SNP Markers for Genetic Map of chrV
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb8719	0.65	chrV	954249	cb25.fpc2454b	104310	p1: ATAGATTCCATTCCCGTTGTA p2: TATTTCTCTTTTTCAGCTTCTCC p4: CCAGCTTACGACTTGGCCAA
cb8773	0.6536	chrV	1036379	cb25.fpc2454b	22180	p1: GTCACTATCCTTCCACAATTTAC p2: CAGTTACTTTTATACAGGAACATCA p4: GCAGAGGTAATCCTACTATGAATCTCTTATC
cb13240	0.65	chrV	1141887	cb25.fpc0024	211796	p1: AGAAAGATTCCATTGTCAGTGT p2: TAGCCATAGATCAGGTGATTG p3: CTTGCCTCCCCGACGC
cb21107	1.87	chrV	1392087	cb25.fpc0022a	38305	p1: CTTCGTGATGGATAGATGAAC p2: GACAAGGACCATATAAAGGAAGT p4: GCCTACTACTACTACTGTCAGATTACGCTA
cb3578	1.87	chrV	1687668	cb25.fpc4095	70215	p1: ACAAAATAAGACCTCAAACTTCA p2: AATCTCGATGGTCAGTTTGATA p3: TCAAACTTCAGTGTGTCATTCAAAACA
cb8459	2.50	chrV	1840393	cb25.fpc2114	137548	p1: GCGAGTAAAGTCGATGAAAA p2: CAGATGACCGAATCTAAATAAAG p3: GACACCTTCTGGACAGTGTTCA
cb8380	3.1557	chrV	1993196	cb25.fpc2114	290351	p1: TTGTTTAATTGTCGATTACCACT p2: TCTCACAAAACCGTCTCTTC p4: TGATATTCTATATCGATGGAGAGCCAAC
cb2439	3.16	chrV	2115162	cb25.fpc4202	28137	p1: TCCAAAATCTCTCAGTTTGTTTA p2: CCTTGACCCACTAGAAGAAAA p4: CCCACTAGAAGAAAAAAAAACTGACCA
cb21790	5.09	chrV	2340160	cb25.fpc4263	10642	p1: AATTCCGTTTCATTTGATTG p2: AAATATTCAAAACTTCCCAAAAA p4: CCCAAAAATTCGGCAACTCCA
cb8284	5.0914	chrV	2492677	cb25.fpc4263	163159	p1: ATGTCAAAAGTTTGCCTAAGAG p2: ACACATCTGTTGTTAGTCGTCTT p4: GGCCTCTTATTTTATCGCCGGTT
cb11784	5.0914	chrV	2619124	cb25.fpc4263	289606	p1: AAAAATGACTCACCATTCAGAC p2: TCCCTCTAGTTACACTTTTCTTTC p3: TGAAGCCGGGAATTTCGCA
cb16713	5.74	chrV	2646567	cb25.NA_025	7802	p1: AGAATCCAAGATTTTCCAACA p2: CTTCCTTTTCATGATGTGTGT p3: GTCTTATACCTGCTCAACGAACAAC
cb4604	6.36	chrV	2797228	cb25.fpc4334b	147835	p1: CTAATTTCACCCCAAACTCAT p2: TCAAGTGTTTCGTCGTACTTC p4: TCAACTTTTGGGGTCAAATTGGAG
cb8300	6.94	chrV	2842019	cb25.fpc2310	12744	p1: AACAACCCCTCAGTAATACCTAC p2: ATAGAAAACCATCCAACCAGT p3: TGTGAAATGGAGCATGTTGAATTT
cb3365	6.9425	chrV	3444387	cb25.fpc2310	615112	p1: ATCTACCTGAGAACCAAAGAAAG p2: CTGACGAATGAAACTCCTCTAT p4: CCTCTATGATTCTCTGAAGTCGCT
cb16783	8.26	chrV	3867747	cb25.fpc0023	405776	p1: GAATTCGGATATTCACAGTAGAC p2: GTGGCTGTTCCTCTTCATTAT p3: TGACAATTGTAGATGAGACACCATGTA
cb17749	9.63	chrV	4984655	cb25.fpc2887a	115552	p1: GCAGAATCCCTTTTACAGTTT p2: GGTTACTATGATTTCTTCGGAGT p4: AGAAATTCAAGCGAAATTTCATAAATTTGTGAA
cb17729	12.3317	chrV	5072256	cb25.fpc2887a	203153	p1: CTCAACAGACTCTTCTTGGTTC p2: CAGAAAAGTTGTTCCCAAAA p3: ACTCTTCTTGGTTCCTCATACTTTTCTT
cb431	19.55	chrV	5526513	cb25.fpc2051	229080	p1: CTGTTGAAAATTTGGATTGAG p2: AATGTCGATTAACTTTAGCAGAA p4: TCGTTTTGTTCTTTATACAACCATCA
cb457	19.5456	chrV	5720667	cb25.fpc2051	34926	p1: CTTGTATTCAAGATTGGATTTGT p2: GATTCAGTGGTCACATCTCTACT p3: TGCAGAACTTCTAAAATAGGAAATGTGAAA
cb392	18.89	chrV	5844990	cb25.fpc4470	1692553	p1: TGTTGGTAGGAGCTTTTGTAGTA p2: AGTTCAGACAGTTGATCAAAAAC p4: TCGAAATGAATCAAAATTCAGATCAGTCTC
cb59	18.2209	chrV	7450535	cb25.fpc4470	87008	p1: AAAATACAAAAGTGCACGAATAC p2: GAGCTCATCTAACTAGTCTGTCAA p4: CGTGAAACTGTTCGATGTGACGAT
cb2964	23.51	chrV	7621226	cb25.fpc2220	1831956	p1: AATCTATTCCAACCTGGTAACAT p2: AATAGGTTGAACTTTTGGGTTAT p4: TTGGGTTATAGTTTTTGCTTCTAGAAATAT
cb3127	24.1209	chrV	8463515	cb25.fpc2220	989667	p1: AATACTTGGAGCAATAAGGACTC p2: TCCTGAAAGATTTTGTTTTACTG p4: TTCTTTTCTCCCTTTTTCCAGGTTG
cb13350	24.1209	chrV	8703355	cb25.fpc2220	749827	p1: CAACTCGAGGTAAGCAGTGT p2: AGCTCACTCAAGGAAATGTTATT p4: TGAGATTCCATTCAACTCCACCAA
cb3883	22.249	chrV	9381227	cb25.fpc2220	71955	p1: CTTCATTTGTCATCTCAAACACT p2: GTGAACGTACAGTTTGAAAGATT p4: ATTCTTTATTGTGCTGCCAATAATATACAGA
cb9955	24.12	chrV	9526181	cb25.fpc4126	72900	p1: TTCAAAAACAATAACATCGATTA p2: TCGCAACTGTATTCTCATATTCT p3: TCCTAGAAAACTCAAAAGTGCGAGAATA
cb9693	24.7499	chrV	10668885	cb25.fpc4126	1215604	p1: GATGTCACAAGGAAAAGATGATA p2: GAAATGCTCAAGTGTTAATCTGT p4: AAGGTAATTGATAATCATAACCATCGAAACAA
cb22547	25.371	chrV	11527565	cb25.fpc4126	2074284	p1: GACTCAAACGCTCAGAAATG p2: ATTTGCTGGTTTAACTTTCTTCT p4: GGAGCACATGTTGTCCTGGA
cb19272	26.67	chrV	11847933	cb25.fpc2501a	246493	p1: GGATGGAAAGATCAGAGAATC p2: GCGAACTATCTCTTCTGATTG p3: AGATCAGAGAATCGGATGGGCTG
cb11419	40.15	chrV	13460684	cb25.fpc4063	177696	p1: AGCTCACAGCACACATAAAAT p2: AAATCTCGGTTATTCCCTGTAT p4: GCCAAAGCGAAAAGTTCTCTGG
cb11355	40.8426	chrV	13635800	cb25.fpc4063	2580	p1: TGTCTAATTTTTGATGTGTTTTG p2: TTTTGAAGTGAATTATGACCTAAA p4: CAGCGAGAAGGCAAGGATGATA
cb11774	40.84	chrV	13777067	cb25.fpc4382b	138588	p1: TATTCAAAGTTCATGAAAGGTTC p2: TTAGTACGCAACCTGATACTTCT p4: TCTTCTTATCTGTCGATTTTTCAAAAAGTGTAT
cb4798	42.80	chrV	13985981	cb25.NA_073	23694	p1: TTACGGTATTTTTAGGGTTTAGC p2: CTCCAAAATTTCAAATCTCTACA p4: CAGAGACCCTCAGGTCTTCAAG
cb2086	47.84	chrV	14143800	cb25.fpc4426a	99228	p1: TAAATATGTGTCAGTTGTGTCCA p2: ATCAGGTAAATCAGTTGATGAAT p4: TGTTCTCTTATCAGTTGAACACTTTAAATACATT
cb12896	49.21	chrV	14730542	cb25.fpc4109	317960	p1: CGTTAATATATTTGTTGGGGTTA p2: ACAATGCAGTTCAAGGAAGTAT p4: GCCTGCCTTCTCTGCGTCT
cb15951	56.9214	chrV	14881655	cb25.fpc0065a	190009	p1: TAAGTTGGCTCAAAAATATCATC p2: TTATCCCTTTTACTGACCAGAAT p4: CTATATGATCTCTATCCATATTTGTACAAATCGAC
cb12967	56.92	chrV	14999944	cb25.fpc2888b	52780	p1: CAAACTTCTCACAATTTGATTTC p2: CGCGAATTTCTAATTTTTCTAAT p4: CTAATTTTTCTAATTTAATTTTTCTGATCTTTCCATTTGT
cb10494	56.92	chrV	15249004	cb25.fpc0129	40145	p1: CTGTTTATCGAACTCATCGTAGT p2: AACGAGTTCAACAATGAAGTG p4: GCGATTCGTCGATTTTGTATGT
cb10621	56.9214	chrV	15469648	cb25.fpc0129	260789	p1: AGCTAGACTCAATGGTTACAATG p2: AAATAACCCAGATTCCTACCTAA p4: CATCCTCTGCTTCTGAGCTCTC
cb8129	56.9214	chrV	15530072	cb25.fpc0129	321213	p1: GCTACTTTTCATCTTCTCATTTG p2: ATTTGTGACCTCCTATCTCATC p4: CCATCCTTTTGTCTTCATATTGCTCATT
cb19816	58.11	chrV	15990402	cb25.NA_031	35194	p1: TAAAAAGATGGCTGAAAAATCTA p2: CTTGTTGGACCAGAAAGAGTA p4: TCCTAGAAGACGAAATATAGCGTTTAGTC

SNP Markers for Genetic Map of chrX
SNP ID	cM	Chrom	ChrPos	UltraContig	UltraPos	PCR & TDI primers
cb12080	0.66	chrX	547956	cb25.fpc1402c	547956	p1: GGTTCCCATATACTACCTCTGTT p2: AAAAAGCCACTCTACATCTGAA p3: CCTGCAGGTGTGCTCCA
cb2376	0.66	chrX	633195	cb25.fpc0071b	20779	p1: GCCCATATCAGTTTATGTTTTT p2: CTACTTTCAGAACGGTGAGTTTA p3: GCTGTGTCGATAACTGTCAAACACA
cb16537	0.66	chrX	707053	cb25.fpc4033	2405500	p1: AAATGAAGCAAGAATACGAGAA p2: AAAACAATATGCTGTTGGATGT p3: TCTTAATGAGATTTCGACCAGAATATTC
cb21766	1.8251	chrX	998488	cb25.fpc4033	2114065	p1: GAGTGTATGAGCAATGTGTGTAA p2: ATCCCTAATCGTTCGATTCTAT p4: CTGATATAGGGGTTCATGAGGCC
cb21200	3.6658	chrX	1945243	cb25.fpc4033	1167310	p1: TAAAACAGTCAAAAACTCACACA p2: AAAAACCTCTTGTCCTACATTTC p3: CGACGTTTTCCGGCTTCCATT
cb22278	4.9646	chrX	2775610	cb25.fpc4033	336943	p1: AAGCAGGACTTTTCAGAAATTAT p2: GACTAAACATTTTGCATGGTAGA p4: CATGGTAGATCTAATTTGAACTTGCAGT
cb18017	4.9646	chrX	3066537	cb25.fpc4033	46016	p1: TGAAATTGGTAGTGTATTTCAAAG p2: TTCAAGTCTGAGAGCTTTGTG p4: GAGCTTTGTGATTAATTAAAATATTTTCAAAGAGC
cb11789	4.9646	chrX	3101284	cb25.fpc4033	11269	p1: AACAAGTCGGTCCAGTATAGC p2: ATTTTTCAGGTTTCATTGGTC p4: GCGTAATCCATGCACCGCTC
cb20692	8.41	chrX	4473579	cb25.fpc0045	1360927	p1: GCTCATTCTTCTTAGCATATTCA p2: GAGAGAAAACAAGAAGATTTCAA p3: TCTGTTTTGACCCAAATTGTGGC
cb7993	8.4142	chrX	4551358	cb25.fpc0045	1438706	p1: AAGGACATTGTTTGATTGTCTAC p2: TGAGAGTGATAGTAGTCGTTTGTC p4: TTGTTTTTTCTTGTTTAGAAGATAATAACAACTTCTT
cb16698	8.41	chrX	4913208	cb25.fpc4069a	137914	p1: ACACTATGTTGAAAGCCAAAA p2: CTTCGATACCTGTTGTTGAGTA p4: AGTACCGATTTGCAATAAGGTACGATA
cb17685	8.4142	chrX	5044223	cb25.fpc4069a	268929	p1: TTTCCAAGCTGTTTTCTTATGTA p2: TCTTGCGATTTTATAAGATTTTC p4: ACTAGAATCAATATAAACATTCGAATGTTTTGTCT
cb12375	9.05	chrX	6249782	cb25.fpc4069c	512230	p1: TTTATGCAAATATCAAGATGTGA p2: TTTTTCAGAACAATAGGATATGG p4: TCGCCAAATGGAAACAAAATCAGTT
cb8973	9.69	chrX	6311841	cb25.fpc0083	335053	p1: AGCGTTTATCAGAGTTTTATAGGT p2: GTATGAGAAGATGAGTTGGATTG p4: AATTTTTCTGCTTACTGTATCAATAGGAAAGA
cb14730	10.30	chrX	7257350	cb25.fpc4066	148609	p1: CGGAATTACGAATTTACAGAAT p2: TTCGAAGAACTATCTCGACACT p4: GGTTATCCGGTGAGTTTTTCAAGTT
cb11422	10.30	chrX	7458611	cb25.fpc3857a	52553	p1: AACCAATAAAATCCTTTCTTAGC p2: ATCCTAATTAATTGTGCTGAGTC p4: GATTTGGTGAAGTTGACAATTGATTG
cb2444	10.3016	chrX	7683876	cb25.fpc3857a	277818	p1: ACTCCTTCGCTCAAATACATAC p2: TTTTATTGAAATTCGGGAGAG p3: GCTCAAATACATACAAGCTTGGTTGA
cb2629	10.9819	chrX	9129168	cb25.fpc3857a	1723110	p1: AGACTTTGAGAAAAGAAAAGGAG p2: TACCAGTTATTGCTGATGACTTT p4: TGCCAACCAAAACCTTCGCT
cb19797	10.3016	chrX	9446760	cb25.fpc3857a	2040702	p1: ACACCCTATCTTCACCAGAAA p2: AATGGTTAGAGAGAAAACACTAGC p3: GCAGAAAAGAGCGAGCGGG
cb1971	10.9819	chrX	9547221	cb25.fpc3857a	2141163	p1: TGTATGTCTTTATTTTAGTGCTTCA p2: CAAACACATAACATCATCTGAAA p4: CCGCAATTTGACAATAGTTGAAAAGC
cb1800	10.9819	chrX	10270196	cb25.fpc3857a	2864138	p1: CCACCTACATTCCATCAAAA p2: GTGTGTTGTTCAGAGTTGATGA p3: GGTACAGCTGGACAAGGAACT
cb13128	10.9819	chrX	10533031	cb25.fpc3857a	3126973	p1: CAAGACAGGATATTTGAAACAGT p2: TATACCACGTTTTAAAGAAGACC p3: CAAAAACACTGACTTAGGGTTGCA
cb10631	11.6442	chrX	11236787	cb25.fpc3857a	3830729	p1: AAGTTAATGAGGCTAGGAAGAAG p2: ATGTGTTTCATGTGTTAGTTGTG p3: CTCAAGAGGATAAGGGTACTTTCTTTCT
cb11728	11.64	chrX	11499721	cb25.fpc0091a	24813	p1: TTGCAAGTAGTCTTGATGTCTAA p2: ATCATATTTTCGACCATGTCTC p4: GCTAAATAGATACCGGTTCTTGGTAGTTT
cb11740	11.6442	chrX	11673086	cb25.fpc0091a	198178	p1: TTTTCTTTCTTCTTTTCCTCTTC p2: ACGGTGTGTGTACACTATTCATT p4: CGAATTGATGGACACCGTTAAAGG
cb6849	11.64	chrX	11840306	cb25.fpc2397	22056	p1: ATTGTTTCCGTATAGGAGGATTA p2: TCACATCCTTGTTTATCATTGTA p3: AATATTCTAAGAAACCCGAGAGGATAT
cb16518	13.61	chrX	13367313	cb25.fpc4044b	592254	p1: CAATTGATAAGTTCGACACTACAC p2: GTGCGGTAATTATATTGAACAGT p4: GCGGTAATTATATTGAACAGTCTATAGAATTC
cb14864	16.3456	chrX	13940104	cb25.fpc4044b	1165045	p1: AATGAAGAAATTCAGGTCAATAA p2: CATGATAAAGGGATGTTTCATAC p4: CAGTTCAATTTCAAGTCTTTTGGTTATGTT
cb1691	17.07	chrX	14787844	cb25.fpc0003	777142	p1: ATCACAGTCAAAACGAGTGATAC p2: ATGATACGTGGTCTCTTGATG p3: TGATACCGTAATTTAATATTTCTCGAAGTCTG
cb9641	17.0651	chrX	15054274	cb25.fpc0003	1043572	p1: TGTTGTTGATATTTTTGTATTTTTG p2: CATCCAACAATGTTTATGACAG p4: CTAAAATACTCTTCACATTTGAGCTATTGTTG
cb9659	17.6786	chrX	15164955	cb25.fpc0003	1154253	p1: ACGGGAAACTAGAAGTATTAACC p2: CTTCTTCAAACATGTTCAGTCTC p4: TCTCTAATTCTCCAATTACCACCGTT
cb9664	17.68	chrX	15220240	cb25.fpc4023	889941	p1: TACAATCAATACCAAATCGAGAG p2: GCGGAATTCTATCATCTTTACTT p3: GCACCCACGGTACAAAAATATTGCTA
cb8211	18.3588	chrX	15662900	cb25.fpc4023	447281	p1: AGAAATGCATTGTTCTCTTTTC p2: CTTTTTCTGGAAACTTTAACTCA p4: GATTCTGTAAATGGAGAAGAGATTTCTGAAA
cb8248	18.3588	chrX	15739895	cb25.fpc4023	370286	p1: TCACAGTTCTTAATGTTATTGGTC p2: CTCCATTGATTGTGGTTGTT p3: AGAACCTTCAAACTTTTTTAGAAATTTTCTTTGT
cb6150	18.3588	chrX	15893204	cb25.fpc4023	216977	p1: GAACAAAGTTTTTGTAAAATGAAA p2: TTCCATATTTTCAGTTCTGGAC p4: TCAGGTTTCTATAAATCAAAAATAAGGGTCC
cb5748	18.36	chrX	16351819	cb25.fpc4403	241539	p1: GTGGGGATTGTCATTCTTATT p2: GCTCTGTACTTCTTTCACTTTCA p3: TCCTTTTCTCGTCGTCATCCC
cb6111	18.3588	chrX	16710001	cb25.fpc4403	599721	p1: TTCTGTTTTTCGTTCAAAATTC p2: AAGTCTGCTCGCTTGAGATA p4: CTGAAAAAAAAACATAATCAAAAGAACATTTTTTATTGT
cb19019	21.03	chrX	16795831	cb25.fpc0106	70023	p1: TTGACTCAACGTTCATTCTTAAT p2: GATGTCTATGAGATGCATTTACC p3: GACGACACTGCAGACTAACAGT
cb18839	21.6713	chrX	17274690	cb25.fpc0106	548882	p1: CATTCTGGGAAGAATATCTACAA p2: CAAATCTACTTCTATCGGGATTC p4: AGATAGATTTTCCCAAACTTGTACAAGATG
cb18742	21.67	chrX	17362265	cb25.fpc0829	2837878	p1: GAATGTGTACCTCAACTCTGTTT p2: ACCCCTCACCACTCAATATAA p4: GTCGGCTGATGCAACGTG
cb7474	26.1286	chrX	18589667	cb25.fpc0829	1610476	p1: AACTTGGATGTTAAAATCTGTGA p2: TTTTGGTACCCACCAAATTAT p4: GATTTTCTAGATTTTGAGATTTTCGAAATCTTCAA
cb15550	25.3767	chrX	19039073	cb25.fpc0829	1161070	p1: AAAAGAAGACACCATCTTCTACA p2: GCTTCAACTCGACAATGAAT p4: TCATCCAACGTTTCCTGTAGTAAGT
cb21042	27.6912	chrX	20100511	cb25.fpc0829	99632	p1: CCGCTTGAGACTCATAGATTAC p2: AAACAGGTGTTCTCTTCCTATTT p4: CTTGTGAGCAATTTGAAAGCTGAGA
cb3581	27.69	chrX	20379957	cb25.fpc2334	179715	p1: AAGTAAGAATTCACCGATTTTTC p2: ACTCGTAATATACGATCAAAATGA p4: CTCTCTTTTTATAAACTACGGATTTGATTATATATTCG