Primers for High-Throughput FP-TDI SNP Genotyping
Our assay design techniques for high-throughput SNP genotyping have seen extensive refinement since the FP-TDI technology was first invented. During the course of
the HapMap Project, we designed FP-TDI primers for and successfully assayed over 15,000 SNPs.
Learn more
about our assay design protocols
File Structure Changes
Three files are available for each chromosome: assays (txt), assays (fasta), and failures (txt)
Two columns have been added to the assay text file to indicate the dye combinations.
A few column headings in assay text file have been renamed.
Important: by accessing any of the files below, you agree to adhere to our data access policy.
| SNP Genotyping Primers |
| region |
snps |
assays |
failures |
|
| Chromosome 1 |
670,804 |
428,823 |
241,981 |
Download
|
| Chromosome 2 |
690,034 |
432,151 |
257,883 |
Download
|
| Chromosome 3 |
570,517 |
353,458 |
217,059 |
Download
|
| Chromosome 4 |
424,683 |
243,632 |
181,051 |
Download
|
| Chromosome 5 |
492,870 |
300,568 |
192,302 |
Download
|
| Chromosome 6 |
498,279 |
291,500 |
206,779 |
Download
|
| Chromosome 7 |
449,214 |
279,118 |
170,096 |
Download
|
| Chromosome 8 |
422,429 |
270,108 |
152,321 |
Download
|
| Chromosome 9 |
395,201 |
245,516 |
149,685 |
Download
|
| Chromosome 10 |
459,382 |
299,554 |
159,828 |
Download
|
| Chromosome 11 |
437,965 |
268,516 |
169,449 |
Download
|
| Chromosome 12 |
441,359 |
266,525 |
174,834 |
Download
|
| Chromosome 13 |
339,429 |
205,350 |
134,079 |
Download
|
| Chromosome 14 |
249,616 |
158,183 |
91,433 |
Download
|
| Chromosome 15 |
228,090 |
152,000 |
76,090 |
Download
|
| Chromosome 16 |
252,063 |
174,562 |
77,501 |
Download
|
| Chromosome 17 |
221,980 |
154,432 |
67,548 |
Download
|
| Chromosome 18 |
236,975 |
153,065 |
83,910 |
Download
|
| Chromosome 19 |
187,347 |
109,321 |
78,026 |
Download
|
| Chromosome 20 |
271,996 |
184,767 |
87,229 |
Download
|
| Chromosome 21 |
128,610 |
80,183 |
48,427 |
Download
|
| Chromosome 22 |
163,039 |
111,082 |
51,957 |
Download
|
| Chromosome X |
279,653 |
136,205 |
143,448 |
Download
|
| Chromosome Y |
23,572 |
10,958 |
12,614 |
Download
|
Need assay designs for other SNPs? We can help, so please
contact us.
|
