The SNPseek database uses publicly available data from a variety of sources. To ensure the accuracy and agreement of dynamic information like chromosomal coordinates,
this page lists release information for all data sources used.
| Public Data Sources |
| source |
data |
file(s) |
build/release |
date |
| Affymetrix |
SNP frequencies |
Affymetrix_allfreqs.txt |
Nov04 | 11/18/04 |
| HapMap |
SNP flanking sequence |
hapmap_snpset*.xml |
16c.1 | 6/21/05 |
| HapMap |
SNP frequencies |
allele_freqs*.txt |
PhaseII | 10/24/2005 |
| Illumina |
SNP frequencies |
Illumina_allfreqs.txt |
Sep04 | 10/11/04 |
| InnateImmunity |
SNP frequencies |
Allele-freqs*.txt |
Part 1 | 4/22/04 |
| Perlegen |
SNP frequencies |
s_chr*.dat |
Nature/Apr05 | 4/7/05 |
| TSC |
SNP frequencies |
allele_frequencies*.txt |
Sep03 | 9/21/03 |
| UCSC |
SNP map coordinates |
snp.txt |
hg17 | 9/27/04 |
| UCSC |
ENCODE regions |
encodeRegions.txt |
hg17 | 9/28/04 |
| UCSC |
RefGene Data |
refGene.txt |
hg17 | 12/8/04 |
| UCSC |
TFBS Sites |
tfbsConsSites.txt |
hg17 | 12/8/04 |
| UCSC/Bejerano |
Ultraconserved regions |
uc16.txt |
hg17 | 4/22/05 |
|
